PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g21862.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 568aa    MW: 66436.2 Da    PI: 7.5883
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g21862.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.21.9e-2521113191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                       +fYn+YA e GFsvrks+ +  + n+ei+ r+fvCs+eg+ree++ k ++++rr+r+ tr+gC+ak ++ + k +g+w v+++  eH+H+lap
  Bradi4g21862.1.p  21 EFYNSYALEKGFSVRKSYVEWDEANEEIILRKFVCSREGSREEKHMKrEDRKRRPRNLTRVGCRAKSVIARVKeTGHWFVKDFIDEHTHPLAP 113
                       6*****************************************999886788999***************99998****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2321113IPR004330FAR1 DNA binding domain
PfamPF105512.9E-34234328IPR018289MULE transposase domain
PROSITE profilePS509668.889512551IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MVDEYLDIVE RTFGSENDGF EFYNSYALEK GFSVRKSYVE WDEANEEIIL RKFVCSREGS  60
REEKHMKRED RKRRPRNLTR VGCRAKSVIA RVKETGHWFV KDFIDEHTHP LAPRDLACLL  120
RSHRRISDEQ KADIVEMEIS RLRKHKIMDI LVMQYGGYDE VGCTTRDIYN FCHLYKQETV  180
AAGDAQMVIC HMMERQERDP NFFFKYLVHG EGHLKGLFWA DSQSRLDHEV FGDVVVFDST  240
YRTNKYNLPF VPFVGLNHHR SIVVFGCGII SHETSESYEW MLRTFSAAMA QKHLISVITD  300
GDLAMQRAIR VVWPDTIHRL CVWHIQQNIV RHLGDALVKV EFRSFIYDRS PIEEHEKKWL  360
DFLERTKVTS QESWLHQMYQ MRKLWCAPYL VGHCFLGLSS NQRSESLNSV LHTHLDGSMT  420
LFKMLEHYER CLSTRCLNES ILDIVALQSV PFTEVDASSL EKHAAQVFTR AMFALVRWST  480
NAASNCTMFE ILDADNLSTY VVAKKDRREK KFQVHCEVKE GSLDRIYCFC HKLECLGTPC  540
SHILYVKTNK RLLFVKFSLL QNQIFAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974DRKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g21862.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2CPB20.0A0A2K2CPB2_BRADI; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-98FAR1-related sequence 5