PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g21265.1.p
Common NameBRADI_4g21265, LOC100829024
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 193aa    MW: 20802.3 Da    PI: 4.7775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g21265.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-182069255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  Bradi4g21265.1.p 20 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 69
                      69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-312077IPR001471AP2/ERF domain
PfamPF008474.8E-122069IPR001471AP2/ERF domain
PROSITE profilePS5103223.672077IPR001471AP2/ERF domain
SMARTSM003807.1E-362083IPR001471AP2/ERF domain
CDDcd000185.37E-302077No hitNo description
SuperFamilySSF541715.89E-222077IPR016177DNA-binding domain
PRINTSPR003673.6E-122132IPR001471AP2/ERF domain
PRINTSPR003673.6E-125979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEMHDNAAGI AAAAAAAAEQ YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ESPEMAAVAH  60
DVAALRLRGR DARLNFPGLA HLFRRPATAE PDDVRAAALE AAAQVRFRPD LVMQLPGSHG  120
NGGGDGGSPE YRLDDVAWDV VLGADDLEAQ SPNMWAELAE AMLLAPPVWG GGAVDNDDWA  180
QGSLWEPSCW SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-171677163ATERF1
3gcc_A9e-171677163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g21265.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275115e-87KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576119.11e-135ethylene-responsive transcription factor ERF022
TrEMBLI1IMA51e-134I1IMA5_BRADI; Uncharacterized protein
STRINGBRADI4G21265.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-27ERF family protein