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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g20720.1.p | ||||||||
Common Name | BRADI_4g20720, LOC100845720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Nin-like | ||||||||
Protein Properties | Length: 881aa MW: 97358.8 Da PI: 5.9073 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93 | 2.1e-29 | 538 | 588 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Bradi4g20720.1.p 538 EKNVSLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 588 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.642 | 525 | 608 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.0E-26 | 540 | 588 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.08E-20 | 775 | 864 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.0E-21 | 779 | 861 | No hit | No description |
SMART | SM00666 | 8.9E-19 | 782 | 864 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 23.964 | 782 | 864 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.7E-16 | 783 | 863 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MDEIGTPNYS DGGSVPDMDL LMLSAFEGLD SFTELVAGPT FRDSILSSSS ISPVQQLLHI 60 SASSSTVNPE EQGDVSIADG SDCTASLASG EFMRMSTATV PRTVHGGVNL AERMLRALAM 120 LRKTSNGGPL LAQVWIPVRN GEHQVLSTSN QPFLLDERLT GYREVSKQFT FSATEGSGLF 180 PGLPGRVFIS GMPEWTSNVM YYNTSEYLRV DYAIRNEVRG SLAMPVFKSS GGTCCAVLEV 240 VMTQEKDNFC AEMDNLSNAL QSVHLSTVKA RAHPQSLTRS QESAFMEILD VLRAVCHEHT 300 LPLALAWVPV CPNSNLNVSA EYGDQAIKFG LRNTDVLCVQ ESACYISDTR MYDFVCACAE 360 HPLEKGQGVA GNAILSNNPF FSSDVREYNT HDYPLAHHAR KFGLHAAVAI RLRSTYTGND 420 DYVLEFFLPL MCRVKEEQQL LLDNLSVTMQ RVCSSLRTVS DAELEEDGIT KSSGIQCLPS 480 DISINSCIQI DASSAIKTNM PLENQIQSTV EQLVDQEHAN EFKQGTTSHG QKIRSSTEKN 540 VSLSVLQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW PSRKIKKVNR SLKKIHNVIS 600 SVHGVEAVIK YDPATGCLVS SVPPLEEPSM MNVEHRSSDP LSIEFDLSNR KFGHDYDAYR 660 REHVGKVVLT TAEYEKMSEI HITTNHGTLK GPLCQDASND SYITNQMTHV RTDMWVEGAE 720 RKNIVCNSVS MPQQFKMKKE TDKDNTNVDH SLPSTSSMTD YSSGVTSSDC PKSQPVNENS 780 MSITVKATYK EHNIRLKLLR SMKYQNLVEE IAKRLKLSAS TFQLKYKDDE DEWVILASDA 840 DLQECFEVLD NTDSHIVKVQ VRDVLFATGS SSGSSSTWCR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g20720.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576097.2 | 0.0 | protein NLP2 | ||||
Refseq | XP_024319185.1 | 0.0 | protein NLP2 | ||||
TrEMBL | A0A0Q3EMH2 | 0.0 | A0A0Q3EMH2_BRADI; Uncharacterized protein | ||||
STRING | Traes_4BS_43C44F47B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g20720.1.p |
Entrez Gene | 100845720 |