PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g13575.1.p | ||||||||
Common Name | BRADI_4g13575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 139aa MW: 15599 Da PI: 7.4207 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 22.7 | 2.7e-07 | 36 | 74 | 88 | 128 |
NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ v+++ ++ v lk+ L+f+ + +g +t+Wvmheyrl Bradi4g13575.1.p 36 TEELVVVSpRRVPVALKQPLIFF---SADGARTRWVMHEYRL 74 4444444438889**********...678899********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.449 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-13 | 6 | 100 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MAMPEAGREG LGLPIGFWFM PNDEELTVYL RKKPGTEELV VVSPRRVPVA LKQPLIFFSA 60 DGARTRWVMH EYRLHPALLA RAASIGKDVE NRVVCRVFWK ATRRDGNLQD MRRPLSPASS 120 CVTEELGDDD EEKMATSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g13575.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310836.1 | 8e-45 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0Q3H302 | 1e-97 | A0A0Q3H302_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48580.1 | 2e-33 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.3 | 6e-09 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g13575.1.p |