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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g13562.1.p | ||||||||
Common Name | BRADI_4g13562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 107aa MW: 11665.5 Da PI: 5.1052 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.1 | 7.9e-15 | 13 | 95 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrF Ptdeel v+yL kk+ + +l+ ++i+ +d+ ++P dLp+ +++ + +fF ++ + ++ +g+Wk++ kd+ v++ Bradi4g13562.1.p 13 LPIGFRFPPTDEELAVYYLPKKALSFPLPW-DIIPVADLALIDPTDLPSD--ETHGDKFFFRRSLEVES--------GGAGVWKTSRKDELVVV 95 699***************************.99***************32..33346677776655443........35688888888877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-20 | 9 | 95 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.696 | 13 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-8 | 14 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MATAVSGGRV LGLPIGFRFP PTDEELAVYY LPKKALSFPL PWDIIPVADL ALIDPTDLPS 60 DETHGDKFFF RRSLEVESGG AGVWKTSRKD ELVVVLPQRV PMARNA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g13562.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310836.1 | 9e-31 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0Q3INE8 | 3e-70 | A0A0Q3INE8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G13560.1 | 1e-45 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22784 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-17 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g13562.1.p |