PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g09886.1.p
Common NameBRADI_4g09886, LOC100842472
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 1333aa    MW: 150650 Da    PI: 7.2077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g09886.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-3110751132260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60  
                        dDgynWrKYGq +vkgse+prsYY+C++++Cp+kkkvers  d++++ei Y+g+Hnh+k
  Bradi4g09886.1.p 1075 DDGYNWRKYGQTQVKGSENPRSYYKCAFPSCPAKKKVERSL-DNQIIEILYKGRHNHPK 1132
                        8****************************************.***************85 PP
2WRKY91.28.3e-2912211278260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60  
                        dDgynWrKYGq +vkgse+ rsYY+Ct+++C++kkkvers   ++++ei Y+g+Hnh+k
  Bradi4g09886.1.p 1221 DDGYNWRKYGQTQVKGSENLRSYYKCTFPNCSTKKKVERSL-ANHIIEILYKGRHNHPK 1278
                        8****************************************.899************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147982.80E-818117No hitNo description
SuperFamilySSF525403.92E-59192458IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.6E-55204484IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3003.8E-13208345IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.5E-15223238No hitNo description
PRINTSPR003641.5E-15295309No hitNo description
PRINTSPR003641.5E-15392406No hitNo description
SuperFamilySSF520584.76E-22523896IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-13556847IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.5E-15746762No hitNo description
PROSITE profilePS5081123.88110691133IPR003657WRKY domain
SuperFamilySSF1182904.32E-2410691133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-2710691133IPR003657WRKY domain
SMARTSM007742.1E-3210741132IPR003657WRKY domain
PfamPF031065.1E-2410751131IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-2512131279IPR003657WRKY domain
SuperFamilySSF1182907.45E-2212151279IPR003657WRKY domain
PROSITE profilePS5081121.76912151279IPR003657WRKY domain
SMARTSM007743.0E-2812201278IPR003657WRKY domain
PfamPF031062.3E-2112211277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1333 aa     Download sequence    Send to blast
MEAPVCDLVD VMYKLPAKLD GLLRHGHMLP KGAQDEIPLI KQDLVVMMAV LHDYSNSGAD  60
NCAMMIKCLM KEARELSYDI EDCIDQYEHV VDSTSRSFYR IPRRLITRCL ITRRKSKTSR  120
LPKKLQQRLW MANKIREFSM RSQEALQRYS LFNSDGISTA SPGSSSTDSQ KNISTASTRY  180
DLSFGSWHPT LYGESTVHPV GIDAPMGKLK AWLTTDGEQN RKVISIAGSG GIGKTTLANK  240
LYHTIGGQFE CRAFLRTSQK PYIKKLLVSM LSQVRPHQPL HTWKVHNLIA DIRTHLQDKR  300
YLIIIDDVWS TSTWDIVIRA LPESNHCSRI IITTEIEDVA LKCCAYDPKY VFMMKPLSND  360
DSRILFFNTA FGCQHECSPD LLEVSNNIIR KCGGFPLALV TIASVLASRM DNLGQWDYVN  420
NSLGYGLRTN PTLDGMKQVL NLSYDNLPQH LKACLLYLSV YQEDWIIWKD DLVKQWIAEG  480
FICATEDKYK EEIARRYFDE LISSRMIQPG HINYNDEVLS CTVHHMVLNL ITHNSIEDNF  540
IIAIDHSQTT ARLADKVRRL SLHFGDAEDA TPPTSMRLSQ IRTLAFFGVF KSMPSIMEFQ  600
LLRVLVLQLW GDEENMSLDL TRISDLFRLR YFQVTSNVTL ELRTQMQGLQ YLETLKMDAR  660
LSVVPSDFCL PGLLHLNIPA GTKLPEGIFR MTSLRTLGYV DLNINSIENV HSLGELTNLQ  720
DLHLTYMAVP SGYLVGNMEF LGSILGKLSN LKSLTLVSAG SSHLCTTNAP YNPAGMIFSG  780
DGLSSMPCPP ALLHRLELPH ICIFSSLPRW IRGLANLRIL KIAVRELSKN DVDVLKKLPV  840
LTVLSLYVAT VPSERIAFDR TGFLLLRYFE FRCTMPWLKF EANAMPNLWK LKLGFSAHGN  900
VCYGAMPVGI EYLSVLKEVS AKIWCVGPEE SNIITAESVL RDTLSMHPGH LRVQVQHVDK  960
IFDDEDDKSS VTKEDHRALK QCDMLVDDRN EQFDVLQKNM GEDTNKQADG WGLWSVGKGT  1020
SSTSFVENLA EGEAPWSIAF PLESPSTRFD LRPGESMATI QRPLILPHSE RRRTDDGYNW  1080
RKYGQTQVKG SENPRSYYKC AFPSCPAKKK VERSLDNQII EILYKGRHNH PKPHNTDSEN  1140
FGDANSGISG TTFEEPGSLD DHPTTWTGIR SEVLDDREAA RQMLMCAHTH FQFNQRPEES  1200
MAAIQSPLAL IPQHSERRSA DDGYNWRKYG QTQVKGSENL RSYYKCTFPN CSTKKKVERS  1260
LANHIIEILY KGRHNHPKPH STGRYSGKML HSSHEDFGDA NSGITGTTFE EPGSSDDESP  1320
WTGILSEVLP VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-42173540136504Disease resistance RPP13-like protein 4
6j5t_F2e-42173540136504Disease resistance RPP13-like protein 4
6j5t_G2e-42173540136504Disease resistance RPP13-like protein 4
6j5t_L2e-42173540136504Disease resistance RPP13-like protein 4
6j5t_O2e-42173540136504Disease resistance RPP13-like protein 4
6j5u_A2e-42173540136504Disease resistance RPP13-like protein 4
6j5v_A2e-42173540136504Disease resistance RPP13-like protein 4
6j5w_A2e-42173540136504Disease resistance RPP13-like protein 4
6j6i_C2e-42173540136504Disease resistance RPP13-like protein 4
6j6i_F2e-42173540136504Disease resistance RPP13-like protein 4
6j6i_G2e-42173540136504Disease resistance RPP13-like protein 4
6j6i_L2e-42173540136504Disease resistance RPP13-like protein 4
6j6i_O2e-42173540136504Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g09886.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758615.10.0disease resistance protein RPM1 isoform X1
RefseqXP_024310997.10.0disease resistance protein RPM1 isoform X1
RefseqXP_024310998.10.0disease resistance protein RPM1 isoform X1
RefseqXP_024310999.10.0disease resistance protein RPM1 isoform X1
TrEMBLA0A0Q3HFS20.0A0A0Q3HFS2_BRADI; Uncharacterized protein
STRINGBRADI4G09890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Representative plantOGRP1207124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-44WRKY DNA-binding protein 26