PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g09552.1.p
Common NameBRADI_4g09552
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 106aa    MW: 11926.2 Da    PI: 7.4522
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g09552.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1263.1e-0861103447
              FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                        +YA+  GF +r+++++   ++ge+ +++fvC+k gk+++ k++
  Bradi4g09552.1.p  61 VNYARWNGFGIRIDYQRPI-KSGETSQAQFVCYKAGKNKKAKED 103
                       68************99988.7888***************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-561103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSVLAHCHQS QCCIDQLKKR TDGRENNEDN DDDAGDGISP PKKPEDNMKF DTIEAAKQHH  60
VNYARWNGFG IRIDYQRPIK SGETSQAQFV CYKAGKNKKA KEDTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g09552.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310413.13e-37uncharacterized protein LOC104585121
TrEMBLA0A0Q3PD938e-74A0A0Q3PD93_BRADI; Uncharacterized protein
STRINGBRADI2G31180.14e-34(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843