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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g09252.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 395aa MW: 43832.3 Da PI: 9.7935 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 137.8 | 1.1e-42 | 223 | 378 | 2 | 159 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 +lL++cAeav +d ++a++lL++++ ++sp gd+ qRla+y++++L+arla+++++ly++ ++ ++ + + a++l+ +++ ++k+ Bradi4g09252.1.p 223 DKLLIRCAEAVFRNDRRNASELLEQIKRHSSPLGDARQRLAHYLAQGLEARLASTGNKLYRSPiGNRAL---STFQLFRAYRLYIDTCCFVKI 312 689*********************************************************866344444...4889999************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159 s+l N++I++av+g+e++Hi+ ++i+ GlQWpaL++ La+R++gpp+lRiT ++ p+++sk+ + Bradi4g09252.1.p 313 SFLFSNKTIYNAVAGKEKLHIVHYGINTGLQWPALIRWLAEREGGPPELRITSINTPQQFSKHVRR 378 **********************************************************99776555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.431 | 196 | 394 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-40 | 223 | 378 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MNQLHTQIHT YSQGWTHQLL TSKPQHITPQ ARLGAYLLTT SAVVAAAAPF TRHAGHLELL 60 LLLLRRHAEN QHLGLGSAGG AALLCQAHKD HTVFSTGTGA VDPKSTLFPS ESSISMDMLP 120 SMAFFKGMEE AKMLLPGDFV VVDSKNKFNM DGETEPGMGS KQIAALVDTD SESEETVLEI 180 LARLMLKACE GEMHINKDNM AAQKSICRRG RDGARQTGVT DLDKLLIRCA EAVFRNDRRN 240 ASELLEQIKR HSSPLGDARQ RLAHYLAQGL EARLASTGNK LYRSPIGNRA LSTFQLFRAY 300 RLYIDTCCFV KISFLFSNKT IYNAVAGKEK LHIVHYGINT GLQWPALIRW LAEREGGPPE 360 LRITSINTPQ QFSKHVRRAI QVPRHRSQAR GCER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-18 | 228 | 368 | 25 | 167 | Protein SCARECROW |
5b3h_A | 2e-18 | 228 | 368 | 24 | 166 | Protein SCARECROW |
5b3h_D | 2e-18 | 228 | 368 | 24 | 166 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g09252.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575624.3 | 1e-122 | scarecrow-like protein 33 | ||||
TrEMBL | A0A2K2CLI2 | 0.0 | A0A2K2CLI2_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09235.1 | 1e-122 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 3e-40 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g09252.1.p |