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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g09239.1.p | ||||||||
Common Name | BRADI_4g09239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 608aa MW: 69031 Da PI: 7.7416 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 319.4 | 7.3e-98 | 225 | 596 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lL++cAeav+s+dl+ a+++L++++ +sp+gd+ qRla yf ++L++rla+++s+ y++l +++s ++e ++a++l+ ++ +lk++ Bradi4g09239.1.p 225 DTLLIRCAEAVASNDLRSASEVLEQIKRYSSPTGDARQRLAYYFSQGLESRLAGTGSQFYRSLIRTRAS---TVELVKAYHLYDATFCFLKVA 314 679**********************************************************99666666...799****************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +l N++I++av+g +++Hi+ ++i+ GlQWp L+q L +R++gpp +R+T ++ p++g e++ee g+rL+++A+++gv+++f++ +a + Bradi4g09239.1.p 315 FLFSNKTIYKAVAGRKKLHIVHYGINLGLQWPDLIQWLVDREDGPPVVRMTSINMPQPGfsPYEQIEEAGHRLSNYASKFGVSIKFQA-IAGT 406 **********************************************************99999*************************.799* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 e+++ e+L+++p+E+l+Vn+ +q ++ +des++ +s +rd vL ++++++P v+v++ + +++++ +++rf +al+ ++alf+++e+ +p Bradi4g09239.1.p 407 PEAVRAEDLHIDPDEVLVVNSLFQFKTWMDESLKFDSvsPRDMVLATIRRMKPPVFVHAVINGSYSAAFLMTRFRQALYSFTALFNMMETMVP 499 *********************************999988****************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r++++r vEr +++r++ n++acega+r+er + +++W++r ++aG++++pl+++++ k +++ + + +++ee+ +l++gWk+r L++ Bradi4g09239.1.p 500 RDNKQRLQVERDFFARSAINMIACEGADRVERPQYYKEWQMRNHRAGLRQLPLDSDIVLMLKDKVKNQNHRHLMINEEHRWLLQGWKGRVLYA 592 *********************************************************************999********************* PP GRAS 370 vSaW 373 +S W Bradi4g09239.1.p 593 LSTW 596 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.846 | 198 | 577 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-95 | 225 | 596 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MVTQPQEDLA LEHISRMLME DDIVDKFTYQ YPDHPKLLQA EQPFAQILSA AATSSFDAKE 60 LSAPDALASA LLPSKVQDPA FFSSGTVELS STVFPIESST GMNILNNMSS MAFFKGMEEA 120 KMFLPRNNVM VDSRGCENKF QIDGEREPAM GRGSKQIAAP VHTDSEEEDE LKKRLDRLIL 180 KGYDRYPGEM QEVLITSDKE NKAARKSIRM RGRHGAMQAV VTHLDTLLIR CAEAVASNDL 240 RSASEVLEQI KRYSSPTGDA RQRLAYYFSQ GLESRLAGTG SQFYRSLIRT RASTVELVKA 300 YHLYDATFCF LKVAFLFSNK TIYKAVAGRK KLHIVHYGIN LGLQWPDLIQ WLVDREDGPP 360 VVRMTSINMP QPGFSPYEQI EEAGHRLSNY ASKFGVSIKF QAIAGTPEAV RAEDLHIDPD 420 EVLVVNSLFQ FKTWMDESLK FDSVSPRDMV LATIRRMKPP VFVHAVINGS YSAAFLMTRF 480 RQALYSFTAL FNMMETMVPR DNKQRLQVER DFFARSAINM IACEGADRVE RPQYYKEWQM 540 RNHRAGLRQL PLDSDIVLML KDKVKNQNHR HLMINEEHRW LLQGWKGRVL YALSTWVAND 600 ASSSEVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-38 | 228 | 596 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g09239.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238972.2 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2K2CLI0 | 0.0 | A0A2K2CLI0_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09235.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-120 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g09239.1.p |