PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g08050.4.p | ||||||||
Common Name | BRADI_4g08050, LOC100841070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 47682.5 Da PI: 8.2355 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.6e-11 | 55 | 79 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p Bradi4g08050.4.p 55 EPDCSYYMRTGLCRFGMTCKFNHPP 79 789********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Bradi4g08050.4.p 100 QPECQYYLKTGTCKFGATCKFHHPR 124 799********************96 PP | |||||||
3 | zf-CCCH | 31.1 | 4.2e-10 | 146 | 170 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ Bradi4g08050.4.p 146 EKECAYYLRTGQCKFASTCKFHHPQ 170 679********************97 PP | |||||||
4 | zf-CCCH | 40 | 6.5e-13 | 307 | 332 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Bradi4g08050.4.p 307 DQPECQFYMKTGDCKFGAVCKFNHPK 332 689*********************96 PP | |||||||
5 | zf-CCCH | 37.5 | 3.9e-12 | 352 | 378 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ Bradi4g08050.4.p 352 PGEPVCTFYSRYGICKFGPNCKFDHPM 378 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.281 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 58 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-10 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 308 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 311 | 333 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 350 | 377 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 351 | 378 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 353 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 356 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MAAAGAGSGG EGSSSPAALA IGTHHGPTEE TMWQMSLGGG GESMEPGPYP ERIGEPDCSY 60 YMRTGLCRFG MTCKFNHPPN RKLAVAAARM NGEYPYRVGQ PECQYYLKTG TCKFGATCKF 120 HHPREKAAIA TRAQLNVLGY PLRPNEKECA YYLRTGQCKF ASTCKFHHPQ PSSTMVAVRG 180 SMYSPGQSAT SPGQNTYPGA VTNWNMSRSA SFIASPRWPG HSGYAQVIVP QSIVQVPGWN 240 PYAAQIGSSS PDDQQRTPGT THYYSGSRQS ETTGMGDHGM FPSYQAGSVP LGVYAVQGDN 300 VFPERPDQPE CQFYMKTGDC KFGAVCKFNH PKERMIPAPN CALSPLGLPL RPGEPVCTFY 360 SRYGICKFGP NCKFDHPMGT VMYGSVTSPT SDVPTLHYQL APSPGHSERL LDGGGSGRSH 420 RVPQSDSQHI PTGDGSTERE AS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g08050.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576637.1 | 0.0 | zinc finger CCCH domain-containing protein 66 isoform X2 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | I1IIN5 | 0.0 | I1IIN5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G08050.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-146 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g08050.4.p |
Entrez Gene | 100841070 |
Publications ? help Back to Top | |||
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