PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g08050.1.p
Common NameBRADI_4g08050, LOC100841070
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 443aa    MW: 47682.5 Da    PI: 8.2355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g08050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.6e-115579327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C++++rtG C++G +CkF+H+p
  Bradi4g08050.1.p 55 EPDCSYYMRTGLCRFGMTCKFNHPP 79
                      789********************97 PP
2zf-CCCH38.81.5e-12100124327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tGtCk+G++CkF+H++
  Bradi4g08050.1.p 100 QPECQYYLKTGTCKFGATCKFHHPR 124
                       799********************96 PP
3zf-CCCH31.14.2e-10146170327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtG+Ck+ ++CkF+H++
  Bradi4g08050.1.p 146 EKECAYYLRTGQCKFASTCKFHHPQ 170
                       679********************97 PP
4zf-CCCH406.5e-13307332227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f+++tG Ck+G+ CkF+H++
  Bradi4g08050.1.p 307 DQPECQFYMKTGDCKFGAVCKFNHPK 332
                       689*********************96 PP
5zf-CCCH37.53.9e-12352378127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C f++r+G+Ck+G++CkF H++
  Bradi4g08050.1.p 352 PGEPVCTFYSRYGICKFGPNCKFDHPM 378
                       5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2815280IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-55279IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-85579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-45878IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-697124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44197125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-699126IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5103125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6143171IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324143171IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7146170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455305333IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5305332IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5308334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4311333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6350377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99351379IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7351378IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9353378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4356376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAAAGAGSGG EGSSSPAALA IGTHHGPTEE TMWQMSLGGG GESMEPGPYP ERIGEPDCSY  60
YMRTGLCRFG MTCKFNHPPN RKLAVAAARM NGEYPYRVGQ PECQYYLKTG TCKFGATCKF  120
HHPREKAAIA TRAQLNVLGY PLRPNEKECA YYLRTGQCKF ASTCKFHHPQ PSSTMVAVRG  180
SMYSPGQSAT SPGQNTYPGA VTNWNMSRSA SFIASPRWPG HSGYAQVIVP QSIVQVPGWN  240
PYAAQIGSSS PDDQQRTPGT THYYSGSRQS ETTGMGDHGM FPSYQAGSVP LGVYAVQGDN  300
VFPERPDQPE CQFYMKTGDC KFGAVCKFNH PKERMIPAPN CALSPLGLPL RPGEPVCTFY  360
SRYGICKFGP NCKFDHPMGT VMYGSVTSPT SDVPTLHYQL APSPGHSERL LDGGGSGRSH  420
RVPQSDSQHI PTGDGSTERE AS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g08050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576637.10.0zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLI1IIN50.0I1IIN5_BRADI; Uncharacterized protein
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]