PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 242aa MW: 27980.7 Da PI: 8.3573

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g04050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	8.8e-18	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Bradi4g04050.1.p 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	54.6	2.6e-17	63	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Bradi4g04050.1.p 63 RGRMTAHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.259	5	57	IPR017930	Myb domain
SMART	SM00717	1.9E-15	9	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.49E-29	9	104	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-16	10	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-20	11	64	IPR009057	Homeodomain-like
CDD	cd00167	3.02E-11	12	57	No hit	No description
PROSITE profile	PS51294	25.539	58	112	IPR017930	Myb domain
SMART	SM00717	2.6E-16	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-15	63	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-23	65	111	IPR009057	Homeodomain-like
CDD	cd00167	1.27E-11	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRMTAHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRSMS 120 PSSSSSSLTY QSCNPETPSI TGIDEQELHG GSNCITSILK GMPVDMDGYL MDQIWMEIEA 180 PEAPSEPSFH DGKDNLYNSA SGPLLPSPMW DYYCTEPRWK TDDDIKMAPQ FGYSKGMDPC 240 Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-28	7	112	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-27	7	112	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-27	7	112	55	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-28	10	112	4	105	C-Myb DNA-Binding Domain
1msf_C	5e-28	10	112	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g04050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237138.1	0.0	myb-related protein MYBAS2
Swissprot	Q4JL76	1e-137	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	I1IHB0	0.0	I1IHB0_BRADI; Uncharacterized protein
STRING	BRADI4G04050.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	1e-71	myb domain protein 59

Link Out ? help Back to Top
Phytozome	Bradi4g04050.1.p
Entrez Gene	100839870

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]