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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g03070.2.p | ||||||||
Common Name | BRADI_4g03070, LOC100845137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 32917.5 Da PI: 4.4805 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.2e-11 | 231 | 271 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq Bradi4g03070.2.p 231 RKRRERINERLKTLQTLVPNG-----TKVDMSTMLEEAVHYVKFLQ 271 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.281 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 225 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-13 | 226 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-13 | 230 | 275 | No hit | No description |
Pfam | PF00010 | 1.0E-8 | 231 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEAGGLISEA GWTMFDFPSQ GEESEIMSQL LGAFPSHLEE GHQDLPWYQA SDPSYYDCNL 60 NTSSESNASS LAVPSECMGY YLGDSSESLD LSSCIAPNDL NLVQEQDATE FLNMTPNLSL 120 DLRGNGESSC EDLTSVGPTN KRKHSSAEEG IDCQARGQKF ARKAEPKRTK KTKQSGWEVA 180 VATRNGSTAS CCTSDDDSNA SQESADTGVC PKGKARAARG ASTDPQSLYA RKRRERINER 240 LKTLQTLVPN GTKVDMSTML EEAVHYVKFL QLQIKVLSSD DMWMYAPLAY NGMNIGLDLN 300 M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g03070.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY661659 | 1e-32 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579215.1 | 0.0 | transcription factor bHLH139 | ||||
Swissprot | Q3E7L7 | 4e-51 | BH139_ARATH; Transcription factor bHLH139 | ||||
TrEMBL | A0A0Q3EEE8 | 0.0 | A0A0Q3EEE8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G03070.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 3e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g03070.2.p |
Entrez Gene | 100845137 |
Publications ? help Back to Top | |||
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