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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g02665.1.p | ||||||||
Common Name | BRADI_4g02665 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 133aa MW: 14754 Da PI: 10.2179 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.6 | 1.4e-15 | 2 | 42 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRRd+iN+++ +L++l+P++ +K +Ka++Le++++YIksLq Bradi4g02665.1.p 2 QRRRDKINDKMRTLQQLMPTC-----TKTDKASTLEEVIQYIKSLQ 42 8********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.682 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.89E-14 | 2 | 42 | No hit | No description |
Pfam | PF00010 | 9.5E-13 | 2 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-15 | 2 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-9 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-15 | 2 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MQRRRDKIND KMRTLQQLMP TCTKTDKAST LEEVIQYIKS LQYQMQVLSN GYGVPTAISP 60 PSGMVSTTSM QPVRDAFGGR RATSVALPPY PFSPTAFACP HYGNGMPLPV PYRDQIGSMY 120 AAQQLAHRRQ QT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g02665.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318881.1 | 6e-93 | transcription factor ALC-like | ||||
TrEMBL | A0A0Q3GYM3 | 5e-93 | A0A0Q3GYM3_BRADI; Uncharacterized protein | ||||
STRING | OMERI05G02560.2 | 6e-16 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50248 | 2 | 2 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-19 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g02665.1.p |