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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g01547.1.p | ||||||||
Common Name | BRADI_4g01547, LOC100838536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 32385.7 Da PI: 7.7433 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.8 | 6.7e-33 | 41 | 165 | 1 | 115 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasn 84 aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+ +a ai++l+++ s++a a++ ++s+s+ Bradi4g01547.1.p 41 AAGGKDRHSKVVTSRGLRDRRIRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIGAAASAIDALPSLdcsfalpaaASPPA---AADDAEVSTSE 130 6899*************************************************************99998876522222...23333333333 PP TCP 85 sssg.............kaaksaakskksqksaasalnlakesr 115 s+g ++ ++a++a n + +++ Bradi4g01547.1.p 131 TSKGsvlslangpsdnnG---------SAAHQANNAYNGNTSHQ 165 333334444333333221.........22222221111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-33 | 43 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.213 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MEEVGKENSN SSCKRLRGAT GGSGGDSSAV AWRTSRVARA AAGGKDRHSK VVTSRGLRDR 60 RIRLSVPTAI QFYDIQDRLG VDQPSKAIEW LIGAAASAID ALPSLDCSFA LPAAASPPAA 120 ADDAEVSTSE TSKGSVLSLA NGPSDNNGSA AHQANNAYNG NTSHQANAYN GGSASGAFAE 180 LLHCSADKAM QQQQPTLAYY AAQSSHVSPM SFEMMPQATF SQEQHHQRHH AAVAFDRSTL 240 QSNAVAAPLW PPSQHPFLMP RFSAAPGEAS SMMHSFFLGG GGSTAASAAP SAGERRLQLW 300 DFKEERKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-22 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-22 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g01547.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101215 | 2e-72 | FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237011.1 | 0.0 | transcription factor PCF8 | ||||
Swissprot | A2ZMR9 | 3e-87 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | I1IGD8 | 0.0 | I1IGD8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G01547.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 3e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g01547.1.p |
Entrez Gene | 100838536 |