PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g00380.1.p
Common NameBRADI_4g00380
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 302aa    MW: 32213.5 Da    PI: 9.0832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g00380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-1417100186
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                       ffkvl     + ++ l+lp kfa+  +  +++    tl+d+ grsW+v l  ++++g   ++ +kGW++Fv+  gL +g f+vF +  
  Bradi4g00380.1.p  17 FFKVL--LPGTFESSLWLPPKFAAGLEACPPGIAVATLRDPAGRSWRVDL--DRRGGNsvCFTGKGWRGFVSCCGLSAGNFLVFDHLA 100
                       78888..44444455********999777777789***************..444444458999********************9765 PP
2B340.74.2e-132102871587
                       -EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SS CS
                B3  15 rlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgr 87 
                       +l +   f+e+ g  + ++ +l++ d  +    r+Wev +++ +k+g  ++ +GW eF+k+ngL++ D +vF+   ++g+
  Bradi4g00380.1.p 210 CLDVTMGFCESLGWTTSRTAELVVVDAGNggerRRWEVGVKVAGKGG--MILRGWPEFAKDNGLRVADACVFRpvhVVGT 287
                       467778899999888888899999996556999*******5555544..4556********************4422233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1614114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-1614114IPR015300DNA-binding pseudobarrel domain
CDDcd100178.17E-161596No hitNo description
PROSITE profilePS5086310.88415112IPR003340B3 DNA binding domain
PfamPF023626.1E-1217100IPR003340B3 DNA binding domain
SMARTSM010192.2E-1117112IPR003340B3 DNA binding domain
SMARTSM010190.11198300IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-12209297IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-10210287IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-10211294IPR015300DNA-binding pseudobarrel domain
CDDcd100179.85E-9217298No hitNo description
PROSITE profilePS5086310.461230300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAAAALSGGG AVRRRKFFKV LLPGTFESSL WLPPKFAAGL EACPPGIAVA TLRDPAGRSW  60
RVDLDRRGGN SVCFTGKGWR GFVSCCGLSA GNFLVFDHLA ALDFAVDPFD ASGCSLDAIV  120
TPPVKLKVDE DDDTASRCHQ DTLSSGNDNN NGGRSPAGTK RKRKRSPNAT TAGGGSCERG  180
GRRRARTEEE DNGETLLVRR RIGTPYELQC LDVTMGFCES LGWTTSRTAE LVVVDAGNGG  240
ERRRWEVGVK VAGKGGMILR GWPEFAKDNG LRVADACVFR PVHVVGTGDR FVQVQVLRGQ  300
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g00380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2348381e-101FJ234838.1 Brachypodium sylvaticum clone BAC 37D5 hardness locus region genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757719.11e-120B3 domain-containing protein At3g18960
TrEMBLI1IG050.0I1IG05_BRADI; Uncharacterized protein
STRINGBRADI4G00380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Representative plantOGRP1612033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-12B3 family protein