PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g57567.1.p | ||||||||
Common Name | BRADI_3g57567, LOC100825927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 714aa MW: 77188.4 Da PI: 6.5058 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 22 | 77 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le+ F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Bradi3g57567.1.p 22 KKRYHRHTPRQIQQLEATFKECPHPDENQRMHLSRELGLEPRQIKFWFQNRRTQMK 77 678899***********************************************998 PP | |||||||
2 | START | 134.3 | 1.3e-42 | 220 | 454 | 3 | 205 |
HHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 3 aeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 a +a++el+++a+a++ +W k + + +d+v k+ s++ ++e +r+s +v +++ lv +++d++ +W ++ ka Bradi3g57567.1.p 220 ATRAMDELIRLAQAGDHVWAKADnggccrevlSVDAYDTVFGKPGGSRGpdVHVEGSRDSCLVLLPAHALVDIFMDSS-KWADFFPtivaKAR 311 6789*****************9999999999999999999999966666999**************************.**999999999*** PP EEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.........-TTSEE-EESSEEEEEEEECT CS START 81 tlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe........sssvvRaellpSgiliepksn 159 t++v+ sg + l+lm+ el +++p+vp R+ f+Ry+rq ++g w+++dvSvd q++ ++ +Ra++lpSg+li ++sn Bradi3g57567.1.p 312 TVDVLVSGmagrsESLVLMQEELHVMTPVVPtRELCFLRYCRQIEQGLWAVADVSVDLLQQRDHaaasryygAPPQARARKLPSGCLIADMSN 404 *********************************************************99999877765566667889**************** PP CEEEEEEEE-EE--S...SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 160 ghskvtwvehvdlkg...rlp.hwllrslvksglaegaktwvatlqrqce 205 g+skvtwveh++ + + p l+r lv sg+a+ga +w+a+lqr c Bradi3g57567.1.p 405 GYSKVTWVEHMETTEgdnKNPiNPLYRDLVLSGAAFGAHRWLAALQRACD 454 **********98854122455699***********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-20 | 14 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.864 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-19 | 20 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-19 | 21 | 80 | No hit | No description |
Pfam | PF00046 | 9.0E-18 | 22 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.662 | 209 | 458 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.44E-28 | 210 | 456 | No hit | No description |
CDD | cd08875 | 2.96E-98 | 213 | 453 | No hit | No description |
SMART | SM00234 | 2.0E-27 | 218 | 455 | IPR002913 | START domain |
Pfam | PF01852 | 8.8E-36 | 220 | 454 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.21E-17 | 476 | 703 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MEYGDDLAVA AGSDAAVAQR RKKRYHRHTP RQIQQLEATF KECPHPDENQ RMHLSRELGL 60 EPRQIKFWFQ NRRTQMKAQH ERADNCFLRA ENDKIRCENI AMREALKNVI CPTCGGPHTN 120 DDYFDEHKLR MENAHLKEEL DRVSSLTSKY LGRPITQLPS SMQQSLSMSS LDLSMGAAAA 180 AMGGPSLDLD LLSGGGSSSG MPAAFQPVSD MERPMMADMA TRAMDELIRL AQAGDHVWAK 240 ADNGGCCREV LSVDAYDTVF GKPGGSRGPD VHVEGSRDSC LVLLPAHALV DIFMDSSKWA 300 DFFPTIVAKA RTVDVLVSGM AGRSESLVLM QEELHVMTPV VPTRELCFLR YCRQIEQGLW 360 AVADVSVDLL QQRDHAAASR YYGAPPQARA RKLPSGCLIA DMSNGYSKVT WVEHMETTEG 420 DNKNPINPLY RDLVLSGAAF GAHRWLAALQ RACDRHACLV AASMPHRDIA AGVTAEGKRS 480 MMRLSERMVS SFCGSLSASQ AHRWTTLSGP GSSGGGGDDV GVRVMVHRST DPGQPNGVVL 540 SAATSIWLPV PCDRVYAFVR DENTRSQWDV LSHGNPVQEV SRIPNGSHPA ASSISLLRGL 600 NASQNSMLIL QESSTDATGS QVVYAPIDLP AANVVMSGED PSAIPLLPSG FTILPDGSGG 660 PGSGSLVTVA FQILVSSLPS SRLNEESVAT VNSLIGTTVE QIKAALNCST TTH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g57567.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570542.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | I1IEQ3 | 0.0 | I1IEQ3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G57567.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g57567.1.p |
Entrez Gene | 100825927 |