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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi3g56490.1.p |
| Common Name | BRADI_3g56490, LOC100830327 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
CO-like |
| Protein Properties |
Length: 394aa MW: 43142.1 Da PI: 5.0842 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi3g56490.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.8 | 7.8e-07 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
C+ ++e++ +++C+++ lC +C + H+
Bradi3g56490.1.p 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35
6***************************9954 PP
|
| 2 | zf-B_box | 26.9 | 9.9e-09 | 47 | 90 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
C+++ ++++ C + ++ lC++C ++H g H+++p+
Bradi3g56490.1.p 47 LCDRCASQPAAVRCLEENTSLCQNCDWNGH-GatslaagHKRQPI 90
7*****************************.66999999999886 PP
|
| 3 | CCT | 63.3 | 7.2e-22 | 336 | 379 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+
Bradi3g56490.1.p 336 RGSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 379
6789*************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANALSR RHMRTLLCDR CASQPAAVRC 60
LEENTSLCQN CDWNGHGATS LAAGHKRQPI NCYSGCPSSE ELSRIWSFAM DTHTAADEPN 120
CEEGISMMSI NDSGVNNHYA AEQESSLLDI ASTALMSHPP TVEKLKPLNS GDGMNLRPLA 180
THQPAGSVSV TPKVQCITDE NMFDDGSIYE DFCVDDADLT FENYEELFGT SHIQTEQLFD 240
DAGIDSYFET KEMPATESKE ELKPMQPECS NVVSADSSLC IPSRHAISSI SLSFSGLTGE 300
SNAGDHQDCG VSPMLLMGEP PWLPPGSEGS FASGSRGSAL TRYKEKKKRR KFDKKIRYAS 360
RKARADVRKR VKGRFVKAGE AYDYDPLSET RSY*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 345 | 349 | KKKRR |
| 2 | 345 | 350 | KKKRRK |
| 3 | 346 | 350 | KKRRK |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G48250.1 | 7e-96 | B-box type zinc finger protein with CCT domain |
