PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g56340.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 410aa    MW: 44649.5 Da    PI: 8.7176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g56340.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-16160209255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR +iN++++ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Bradi3g56340.2.p 160 RSKHSATEQRRRTKINDRLDILRELLPNC----DQKRDKASFLLEVIEYIRLLQ 209
                       889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.21E-14156213No hitNo description
SuperFamilySSF474593.79E-18156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-20157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.123158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-14160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-10164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MELFQGEEPA HDFLSLRAGG GSSPFQHRLQ SAQQAGYGLG PHSLVKPAEP VKQSSSHGGD  60
GAVSAAADLG EQVLPGGVGT FSIRQVPDAR PREEAGMGRD ASVAAVHQGS RMEIAHEARS  120
GAMVRSAPPS TMWQDSGIDK RSRAARSSGS SADQEPSSPR SKHSATEQRR RTKINDRLDI  180
LRELLPNCDQ KRDKASFLLE VIEYIRLLQE KCQKYESAIP EKDPTDSKSM AWDKVYCRSR  240
WRNTQNISQG QGGGLSAATE DMNNEQHCSP KGITVAPTSL FTTQSVKETS TTASSSQNII  300
ENNMPNNQLS WLSMSTMNQN SNASNSKLSK QETQSLRNDT QSLSSAYSQG LLHKLKEALQ  360
KSGVDPSQAN ISVEINMDKR ARANAHIHDN SKANEGKEPM HITKRLRCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g56340.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236005.20.0transcription factor BIM2 isoform X3
TrEMBLA0A0Q3QIL10.0A0A0Q3QIL1_BRADI; Uncharacterized protein
STRINGBRADI3G56340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-37BES1-interacting Myc-like protein 2