PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g54720.1.p | ||||||||
Common Name | BRADI_3g54720, LOC100841640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 417aa MW: 43800.2 Da PI: 5.6758 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.1 | 5.2e-18 | 336 | 369 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ kTp+WR gp g+ktLCnaCG++y++ + Bradi3g54720.1.p 336 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 369 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.6E-16 | 330 | 380 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-14 | 330 | 392 | No hit | No description |
PROSITE profile | PS50114 | 11.213 | 330 | 366 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-14 | 334 | 367 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.45E-14 | 335 | 392 | No hit | No description |
Pfam | PF00320 | 1.2E-15 | 336 | 369 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 336 | 361 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MASGRFMEEM MREHEQVLLE ATLYDHIDDL LDFPKEEDCA ADVLLLDAPA PGSPLSARII 60 GAPPVPPPPS MELAAPPPPA AAAVPAFFAA EAFGSKDCHI GPCEELDMDM AQLEWLSGLF 120 DDASIPHEPA FNCAAPIKAS AMGATNAAAA VVIPDKLEDA LFRSSSPTSV LEDNSFNNVG 180 AGAKNNNNVN NGSGGSSASS SSSSSASSCS ESFSGSGGAR TTWSAPVSPR PEPPVLIIPA 240 RARSKRSRQS AFVRSSAPAA EPTILVPTPM YSSTSAHSDP ESCNIAETNS QPPAMKKKKK 300 AKKPAPPVTS DAEGDADADY EEGGGSALPP GAVRRCTHCQ IEKTPQWRAG PLGPKTLCNA 360 CGVRYKSGRL FPEYRPAASP TFVPAIHSNS HKKVVEMRQK VAPKGDDLLQ YIRRRD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g54720.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353649 | 1e-118 | AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24. | |||
GenBank | AK356685 | 1e-118 | AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235943.1 | 0.0 | GATA transcription factor 10 | ||||
Refseq | XP_010235944.1 | 0.0 | GATA transcription factor 10 | ||||
Refseq | XP_024316778.1 | 0.0 | GATA transcription factor 10 | ||||
TrEMBL | I1IDP3 | 0.0 | I1IDP3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G54720.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5169 | 34 | 51 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-37 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g54720.1.p |
Entrez Gene | 100841640 |