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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g54640.3.p | ||||||||
Common Name | BRADI_3g54640, LOC100834520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27721.4 Da PI: 7.6471 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 67 | 113 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR riN+++ L++l+P++ K +Ka++L A+eY+k+Lq Bradi3g54640.3.p 67 VHNLSEKRRRCRINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKQLQ 113 6*************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-19 | 61 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.012 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-20 | 66 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-18 | 66 | 117 | No hit | No description |
Pfam | PF00010 | 3.8E-14 | 67 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-19 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMDGGMDQGR FDLIMRHQQQ QQHQGFGTMA GLAGAPCDSE EALGSSESEP AGRPARARGK 60 RARAAEVHNL SEKRRRCRIN EKMKALQSLV PNSSKTDKAS MLDDAIEYLK QLQLQVQMLS 120 MRNGLYLPQV NLPVGAPEPP AAPQMPATVN QNSIEASNPL VALLPMNQIS GAQHSFDPPN 180 HDLRQHHEPF VLSGVPCTTT RGPRFPPGSS RPDLESLQLT VSAEMILQEN VMLEHRPSCT 240 QHAVSVPGNT RATA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g54640.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360656 | 7e-99 | AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317269.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A2K2D536 | 0.0 | A0A2K2D536_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G54640.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 2e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g54640.3.p |
Entrez Gene | 100834520 |