PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g52880.1.p | ||||||||
Common Name | BRADI_3g52880, LOC100825001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 319aa MW: 33780.2 Da PI: 8.2367 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 67 | 126 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds++tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ Bradi3g52880.1.p 67 HDSPLKCPRCDSAHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRA 126 67899*****************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-30 | 65 | 125 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-33 | 69 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.245 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MMAGAAHPMH FCMDSDWLKG MVVPEDQGGA MGSSSPSSPS DTMIIACPQP MQQHQAQQQD 60 RRLRPQHDSP LKCPRCDSAH TKFCYYNNYS LSQPRYFCKT CRRYWTKGGS LRNVPVGGGC 120 RKNKRATRKP SSSSAVVVPV APSPAMPMSM MLHGGRHVET SGGLHLSFSG STMQLPSHTS 180 APDPLCSSLG LLDWKYDNVF SGSGGGTTFE SANSEAAHFT GQGMMGIGGS RGGADCHALD 240 ALRYAASLGM GEHLALPFGA GARAERDHAV EMKPLSLEWC GEASRVPESS TISSLSGLGL 300 WSGMISGAHH HHGSSAAI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g52880.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU730895 | 0.0 | EU730895.1 Brachypodium distachyon clone BAC DB009O11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570200.1 | 0.0 | dof zinc finger protein DOF5.6 | ||||
TrEMBL | I1ID22 | 0.0 | I1ID22_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G52880.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 7e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g52880.1.p |
Entrez Gene | 100825001 |