![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g52790.2.p | ||||||||
Common Name | BRADI_3g52790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 39783 Da PI: 8.2921 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.5e-09 | 171 | 218 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq Bradi3g52790.2.p 171 SHSLAERVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 218 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.42E-10 | 165 | 222 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 165 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 167 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.504 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 171 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 173 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 370 aa Download sequence Send to blast |
MAHCGGGGLP SRRPGAQLQQ ETAVESLCQS LMLDDVMLHD GRYRAICGAF GGYLQEWPDM 60 SSACYAGGFG ATPVQEVSNG GNSFSCSGGG STKRKSDAYL DAKGECKRPR GKQQVCELDQ 120 SSGRGKPEKA KPAGTRKKGD VAAQKQDPRA AGGQKTDYIH VRARRGQATD SHSLAERVRR 180 ERISERMRYL QELVPGCDKV TGKAGMLDEI INYVQSLQKQ VEFLSMKIAA SNPVVNFDIV 240 EDLFGGRRLG QACSPAAATM PMPIHGQMDT SCLQMQQMHQ PAAAGFGLEM VVNNQYTPAQ 300 SRPLPAATPP PVSAGASVES CLDVNGAAAW DIGSQNLFSG FDAQFQQVQS ELLFLSSKAC 360 RLLFFFFRN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g52790.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK073952 | 1e-124 | AK073952.1 Oryza sativa Japonica Group cDNA clone:J033078L20, full insert sequence. | |||
GenBank | AK119183 | 1e-124 | AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570191.1 | 0.0 | transcription factor bHLH63 | ||||
Swissprot | Q8GY61 | 1e-47 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A0Q3IKQ5 | 0.0 | A0A0Q3IKQ5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G52790.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34530.1 | 3e-39 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g52790.2.p |