PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g52420.2.p

Common Name

BRADI_3g52420, LOC100834721

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WRKY

Protein Properties

Length: 450aa MW: 47564.7 Da PI: 6.4355

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g52420.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	219	277	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ Bradi3g52420.2.p 219 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNTLVITYTSEHNHP 277 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.029	213	279	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	7.0E-31	215	279	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	216	279	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	218	278	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	220	277	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MCDYFLHRLE AGEQQPAGDL TDILRAGGAM PPVDAADLPS TATEWRLQSP TRLFAPTIQS 60 SVASDGAGPS AFDPFSGLQD PFSSCSTDYP SSSGSAAADF FDALAHDAMD AKVGVGNYVE 120 PAGATGGGAG GPLDMRNHHM MPIGPYATMG RGAVKLGGPM AAGQGLCPFD GVRGLQMSSS 180 PRSAGGGTKR RKNQSRKVVC IPAPEAAVPG RTTGEVVPSD LWAWRKYGQK PIKGSPYPRG 240 YYRCSSSKGC PARKQVERSR TDPNTLVITY TSEHNHPWPT QRNVLAGSTR SHYAKNSSNT 300 TAAANSSKKN SSSRQQKPII AKAEPRDHPQ TAASSTTTTS APPAAVKEEA AGDDTSAATL 360 LDDHLLQQMF SQSCYRPMIP DQSQAGGGGH HDDFFADLTE LDSDPVSLIF SAEYMETCRQ 420 GGEPDKEKQA VDNKDLQLDP FVLDWAPAG*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MCDYFLHRLE AGEQQPAGDL TDILRAGGAM PPVDAADLPS TATEWRLQSP TRLFAPTIQS  60
SVASDGAGPS AFDPFSGLQD PFSSCSTDYP SSSGSAAADF FDALAHDAMD AKVGVGNYVE  120
PAGATGGGAG GPLDMRNHHM MPIGPYATMG RGAVKLGGPM AAGQGLCPFD GVRGLQMSSS  180
PRSAGGGTKR RKNQSRKVVC IPAPEAAVPG RTTGEVVPSD LWAWRKYGQK PIKGSPYPRG  240
YYRCSSSKGC PARKQVERSR TDPNTLVITY TSEHNHPWPT QRNVLAGSTR SHYAKNSSNT  300
TAAANSSKKN SSSRQQKPII AKAEPRDHPQ TAASSTTTTS APPAAVKEEA AGDDTSAATL  360
LDDHLLQQMF SQSCYRPMIP DQSQAGGGGH HDDFFADLTE LDSDPVSLIF SAEYMETCRQ  420
GGEPDKEKQA VDNKDLQLDP FVLDWAPAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-23	192	280	2	80	Disease resistance protein RRS1
5w3x_D	3e-23	192	280	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g52420.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368994	1e-135	AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.
GenBank	AK372278	1e-135	AK372278.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148O17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572849.1	0.0	probable WRKY transcription factor 35 isoform X2
Swissprot	O64747	3e-65	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0Q3JQQ3	0.0	A0A0Q3JQQ3_BRADI; Uncharacterized protein
STRING	BRADI3G52420.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-60	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Bradi3g52420.2.p
Entrez Gene	100834721

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]