PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 306aa MW: 33375.2 Da PI: 4.7176

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g52260.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.3e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +lv +++++G ++W++ +r g+ R++k+c++rw +yl Bradi3g52260.1.p 16 RGSWTPQEDMRLVAYIQKHGHPNWRALPRQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	53.2	6.8e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++lG++ W++Ia+ ++ gRt++++k+ w+++l Bradi3g52260.1.p 69 RGNFTAEEEETVIKLHALLGNK-WSKIAASLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-22	7	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.819	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	2.17E-29	13	110	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-15	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	9.56E-10	18	63	No hit	No description
PROSITE profile	PS51294	26.182	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-26	67	117	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-14	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-10	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLVAY IQKHGHPNWR ALPRQAGLLR CGKSCRLRWI 60 NYLRPDLRRG NFTAEEEETV IKLHALLGNK WSKIAASLPG RTDNEIKNVW NTHLKKKASP 120 KKKEHQQQEK PGAAKNNAAN GDSDPASSSS ASSSTTSNEP EDMIDISEAL LEALKDKEAF 180 PEAAPMSMSS CSSSSSLTTT YASGGVEELL ELPEIDMDEN IWSIIDDDDF AADRPQGDAT 240 VPCAAIAAGQ GEEEGKEWWL EDLEKELGLW GPTEELQAFV GPMTEGDPVC SYFQSRPTTP 300 ASNSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-25	14	118	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g52260.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679437	1e-127	HF679437.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB31 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572844.1	0.0	myb-related protein Zm1
Swissprot	P20024	1e-109	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	I1ICT9	0.0	I1ICT9_BRADI; Uncharacterized protein
STRING	BRADI3G52260.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	6e-68	myb domain protein 63

Link Out ? help Back to Top
Phytozome	Bradi3g52260.1.p
Entrez Gene	100833183

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]