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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g50930.3.p | ||||||||
Common Name | LOC100828697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 725aa MW: 75254.2 Da PI: 6.2711 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 284.6 | 2.8e-87 | 365 | 723 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + L ++A+a ++g+ + a+++Larl+++ p g+p+ R a+y++eAL la+ ++ + +++ ts+ +++ +laa+k fs++sP+l+f++ Bradi3g50930.3.p 365 DELAAAAKAAEAGNSTGAREILARLNHQLPPVGKPFLRSASYLKEALLLALAD-GQ---HHGASRLTSPLDVALKLAAYKSFSDLSPMLQFAN 453 7899************************************************9.33...3334555555669********************* PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 +ta qa+l++++ + +++H+iDfd++ G+QW+++lq+La R+ p l++T+++s++s++ el+ t+++L++fA+ lg+pfefn++ Bradi3g50930.3.p 454 FTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgaggVALPLLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAV- 545 *********988776699************************966444499****************************************8. PP GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +++++++ eL + +E +aV+l + + + +L+lvk+l Pk+vv ++ ad+ + +F ++fl++++ ++ l+dsl+a Bradi3g50930.3.p 546 --SIDAFSPAELISPTgDEIVAVSLPVGCSARA---PP----LPVILRLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLLDSLDAA 629 ..9999***999666689********9777665...44....556*********************************************988 PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 + +s+ + k+Er+l++++++++v + ++ + + Wr+ + +aGF+pvpls+ a++qa++ll++v+++g++ve++ l+l W++ +L Bradi3g50930.3.p 630 -GIDSDSACKIERFLIQPRVEDAVLGRRKA-----DKSMAWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVGLTLFWQRGEL 716 .89*********************988877.....78899***************************************************** PP GRAS 368 vsvSaWr 374 vsvSaWr Bradi3g50930.3.p 717 VSVSAWR 723 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.157 | 337 | 703 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.6E-85 | 365 | 723 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MRAALLGAER NGGVDHHLAG RGSGKDLFWA AAGGLEPRSV LDCSRRLSPP NSTSTLSSSL 60 GGGAADSTGV AAVSESSAGD AEATKWGAPG DHGGGGGGGG GRKEDWGGGG CELPPIPGAL 120 DVGLVGGEGW DAMLGNAAAA AGQDQTFLNW IMGAAGDLEL PVPPLPMHQQ PLVDNAGFGF 180 SAVDPLGFSL DHPLGGVSSD LSSSGAMSHT TTGGGGSGGG SKASSAFGLF SPEAASLQPP 240 PPPMLFHEGI DTKPPLLASQ PPGLLNQYQH QPPPPAAAFF MPLSSFPDHN QRSQLHQPPP 300 KRHHSVPDDL YLTRNHLGTS AAGQGLAFSP LHGSVPFQLQ PSPPPPLRGA MKTTAAEAAQ 360 QQLLDELAAA AKAAEAGNST GAREILARLN HQLPPVGKPF LRSASYLKEA LLLALADGQH 420 HGASRLTSPL DVALKLAAYK SFSDLSPMLQ FANFTATQAL LDEIACSAAS CIHVIDFDLG 480 VGGQWASFLQ ELAHRRGAGG VALPLLKLTA FVSAASHHPL ELHLTQDNLS QFAADLGIPF 540 EFNAVSIDAF SPAELISPTG DEIVAVSLPV GCSARAPPLP VILRLVKQLG PKIVVAMDYG 600 ADRADLPFSQ HFLHCFQSCM FLLDSLDAAG IDSDSACKIE RFLIQPRVED AVLGRRKADK 660 SMAWRNVFAA AGFTPVPLSN LAEAQADCLL KRVQVRGFHV EKRGVGLTLF WQRGELVSVS 720 AWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-27 | 439 | 723 | 80 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g50930.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371946 | 0.0 | AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570043.1 | 0.0 | scarecrow-like protein 27 | ||||
TrEMBL | I1ICC3 | 0.0 | I1ICC3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50930.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 | Representative plant | OGRP1750 | 12 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 2e-93 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g50930.3.p |
Entrez Gene | 100828697 |