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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi3g50220.1.p |
| Common Name | BRADI_3g50220, LOC100836770 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 226aa MW: 25644.4 Da PI: 4.5266 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi3g50220.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.6 | 1e-18 | 33 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ft+eq++ Le+ F++ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++
Bradi3g50220.1.p 33 KRRFTDEQVRSLESTFHSrRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 86
458**************9899********************************9 PP
|
| 2 | HD-ZIP_I/II | 120.6 | 8.1e-39 | 32 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++ L+++yd l+++ e+L++e+ +L+++l+e
Bradi3g50220.1.p 32 RKRRFTDEQVRSLESTFHSRRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFADLRAHYDDLHARVESLKQEKLTLAAQLEE 124
8*****************9999*******************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MESDCQFLLA PPMYGDGQFL QQQLMGGSGE IRKRRFTDEQ VRSLESTFHS RRAKLEPREK 60
AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFADLRAH YDDLHARVES LKQEKLTLAA 120
QLEELKEKLS ERQDQSGSSD DGAEHEVDHD KDVRDNKVSC VVEEEEAEGA APVVDVVSDE 180
SAVGWYEYER LAYGGGAAAA LPEPFCATPE LWETTWPLVE WNAVA*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK367456 | 1e-124 | AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16. |
