PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g50160.2.p | ||||||||
Common Name | BRADI_3g50160, LOC100835329 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 406aa MW: 42619.1 Da PI: 8.4204 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 323 | 357 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l Bradi3g50160.2.p 323 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 357 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.5E-18 | 317 | 371 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.965 | 317 | 353 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.32E-14 | 320 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-15 | 321 | 355 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.71E-14 | 322 | 379 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 323 | 348 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.8E-17 | 323 | 357 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MTHQTLISSA PAFSSASHLL HASSPSPPTL FRRSSSAAAS VMSSFAHHHG SLVEKEGKMA 60 ALRSSLRPCE AAEDMAAAVA VGPAAWGAGL LGDGFLVEDL LDLEDLCEVD KEGGGVFPEA 120 APAADEEKSG DDHSHGSSVV SYELLPLLPP EMDMDLPAHD AEELEWVSRI MDDSLAELPP 180 QPQLPAAPSA AWQHRPRPRE AAASSAPADP MRTPTICALS TEASVPVKAK RSKRSRATVW 240 SLSGASLSDS ASSSTTTASS SGSSSTSLSS FLLDSPAFAA GSSLKKKSKH GKQHKPKKRG 300 RKPKHLASSP FLASVPVPGD RRCSHCGVQK TPQWRAGPEG AKTLCNACGV RYKSGRLLPE 360 YRPACSPTFV GTIHSNSHRK VLEMRRKKDP VVGFEAAAPT AVASF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g50160.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569981.2 | 0.0 | GATA transcription factor 5 | ||||
TrEMBL | A0A0Q3QFK4 | 0.0 | A0A0Q3QFK4_BRADI; GATA transcription factor | ||||
STRING | BRADI3G50160.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-40 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g50160.2.p |
Entrez Gene | 100835329 |