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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi3g46320.6.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 260aa MW: 29058.7 Da PI: 9.5481 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi3g46320.6.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.7 | 4.1e-18 | 80 | 134 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le+ F+++++++ e++ LA++l+L rqV vWFqNrRa+ k
Bradi3g46320.6.p 80 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTK 134
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 120.3 | 9.9e-39 | 80 | 167 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
+kk+rlskeq+++LE+sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr
Bradi3g46320.6.p 80 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTKMKQTEVDCEYLKRCCETLTRENRRLQREVAELR 167
69************************************************************************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MAHLTRVERT LVFLVVVRRS GSADSEVCRR GLDVNTVPVD DGASTPQSLL PSSMEVEVAV 60
RQAVDQEASE DEDNGGGRVR KKLRLSKEQS ASLEDSFKEH STLTLEQKSN LANRLSLRPR 120
QVEVWFQNRR ARTKMKQTEV DCEYLKRCCE TLTRENRRLQ REVAELRTFR PTPTYPFYHH 180
HHHLSGVSTA LPACHSCDNN NKATIYYAPP VVATPASITT VSSPGQRSPP SSTASSLFAR 240
PHFAPFTIHP VLRRQPSAS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 77 | 83 | RVRKKLR |
| 2 | 128 | 136 | RRARTKMKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
