 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi3g46320.2.p |
| Common Name | BRADI_3g46320, LOC100827090 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 362aa MW: 40130.3 Da PI: 7.1313 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi3g46320.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56 | 7e-18 | 182 | 236 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le+ F+++++++ e++ LA++l+L rqV vWFqNrRa+ k
Bradi3g46320.2.p 182 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTK 236
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 119.4 | 1.9e-38 | 182 | 269 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
+kk+rlskeq+++LE+sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr
Bradi3g46320.2.p 182 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTKMKQTEVDCEYLKRCCETLTRENRRLQREVAELR 269
69************************************************************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MICLWLLYIW YIYLLPLCPH HSKTPPPLIG MELELSLGDS PAPVNATITP AQAPTRTGKV 60
EDHKLVLGLR VTANERVEED NQRTSTPRAE TVYGEDDEAC HQTASPMEAS LSCLLPLVCA 120
QTGSADSEVC RRGLDVNTVP VDDGASTPQS LLPSSMEVEV AVRQAVDQEA SEDEDNGGGR 180
VRKKLRLSKE QSASLEDSFK EHSTLTLEQK SNLANRLSLR PRQVEVWFQN RRARTKMKQT 240
EVDCEYLKRC CETLTRENRR LQREVAELRT FRPTPTYPFY HHHHHLSGVS TALPACHSCD 300
NNNKATIYYA PPVVATPASI TTVSSPGQRS PPSSTASSLF ARPHFAPFTI HPVLRRQPSA 360
S*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 179 | 185 | RVRKKLR |
| 2 | 230 | 238 | RRARTKMKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
