PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g46200.1.p | ||||||||
Common Name | BRADI_3g46200, LOC100834217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 454aa MW: 48385.4 Da PI: 5.7618 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.7 | 9.9e-14 | 267 | 312 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++Le+ +eYIk Lq Bradi3g46200.1.p 267 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLEEIIEYIKFLQ 312 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.89E-14 | 260 | 316 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-17 | 260 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.733 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-17 | 264 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-11 | 267 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-14 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MGGFVDPFIP SPAWPQDMVF PGSSWAGSSA QGMGFHHLQN GSSPTQLITD KELAAATVFP 60 AGNNAKLHDH EQQLLLRSTD DLDYTLCSIL GGQNVSLTDS APVLCSSSNE SSGSEQSGAA 120 GVLPQFLMGE RHPVPVAWAS GYAGEETPQS FGFPGDDLLH EAAPNGYQQL GTVAPAQLQL 180 HDDAKFSAGK LLSFAPGQQQ IRPDIDTLQQ EFGSGLRHLN LVPGAQLAPF NPKQCAEDGR 240 NGNGVAVGGG APKARVRARR GQATDPHSIA ERLRREKISD RMKNLQELVP NSNKTDKASM 300 LEEIIEYIKF LQLQTKVLSM SRLGATDALV PLLMDSHNES SGLVMGSPKS GAAAGGKGHA 360 GHRQTDSDDF VEDKVVLEQE VAQMMEDNMT MAMQYLQNRG LCLMPITLAS AISVQKGTFS 420 ATVRPENGGK DDVKRVPTVL PSQKEVKSRP NVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 261 | ARVRARRGQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g46200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318299.1 | 0.0 | uncharacterized protein LOC100834217 | ||||
TrEMBL | A0A0Q3M621 | 0.0 | A0A0Q3M621_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G46200.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-46 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g46200.1.p |
Entrez Gene | 100834217 |