PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g42627.5.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 727aa    MW: 78850.1 Da    PI: 9.376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g42627.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.1e-07333383153
               AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ngkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       ++++GVr    +gr+ A  +      n+k++++++g+++tae+Aa a+ aa+ ++
  Bradi3g42627.5.p 333 PRFTGVRKLA-SGRYSAVFY---HsvNKKSATVRVGTYDTAEQAAGARAAAKIAM 383
                       6799***887.8******55...4435578************9999999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1035118.11E-7943257IPR023329Chlorophyll a/b binding protein domain
Gene3DG3DSA:1.10.3460.104.2E-8756251IPR023329Chlorophyll a/b binding protein domain
PfamPF005042.5E-4960226IPR022796Chlorophyll A-B binding protein
PfamPF008478.9E-5333380IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-5334384IPR016177DNA-binding domain
PROSITE profilePS510329.48334396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-5334385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MAATTMTLST PAMKLARAAT VLGGGRITMR KSVAKASSSS GSPWYGSDRV LYLGPLSGDP  60
PSYLTGEFPG DYGWDTAGLS ADPETFAKNR ELEVIHCRWA MLGALGCVFP ELLARNGVKF  120
GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR VAGGPLGEIV  180
DPLYPGGSFD PLGLAEDPEA FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH  240
LADPVNNNAW AFATNFVPGN SAKSEMPPFQ SGQSVGWSNT LPNYCVVSWP IQQLWYTTSH  300
SFRRSPMAPP GTVSSPNPGG SSSSKGVGGG TEPRFTGVRK LASGRYSAVF YHSVNKKSAT  360
VRVGTYDTAE QAAGARAAAK IAMASAPSRP PPTPPPPRLP WISTTSSSRI DSPSLKAALA  420
MALVHHKRLP APAGAAAATS AAASPKSPPL VRWKRKAKDR KREILRLREE LKLLQDGARR  480
EELEPPVASC RCHFFDGCGS LPPPGGGEHW VDEVLRRRFL RLARWMEKRR RPDRSLPVSG  540
SLEFNREDEI QQLSLSIDFL VELSDGIFGK KEAGSSFATF SHQAVDFILA ALRNILISKR  600
EKELVEEIID GLVARLMKRM CTIPENTGTS DSGSVECSDA QFSVQHLFRK LGNEEFIGQR  660
IILAVSQKIS NVSERLLLVD PFDGSFPDMH DNMFIINFRR MGQIYSQDTQ RLGSPGKHKW  720
AVCSIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jcu_g1e-16112591266Chlorophyll a-b binding protein, chloroplastic
3jcu_n1e-16112591266Chlorophyll a-b binding protein, chloroplastic
3jcu_y1e-16112591266Chlorophyll a-b binding protein, chloroplastic
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454462RKAKDRKRE
2515530RRRFLRLARWMEKRRR
3516531RRFLRLARWMEKRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g42627.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3629910.0HM362991.1 Triticum aestivum chloroplast light-harvesting chlorophyll a/b binding protein mRNA, complete cds; nuclear gene for chloroplast product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755694.10.0protein MULTIPOLAR SPINDLE 1 isoform X2
TrEMBLA0A2K2D2Q50.0A0A2K2D2Q5_BRADI; Chlorophyll a-b binding protein, chloroplastic