PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 229aa MW: 25803.7 Da PI: 10.6801

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g42350.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.8e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+WT eEd++l v+ +G g+W++ +r g +R++k+c++rw +yl Bradi3g42350.1.p 14 KGAWTREEDDRLSSHVRAHGEGRWRALPRLAGlPHRCGKSCRLRWVNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	51.2	2.9e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed l+v +++ lG++ W+ Ia++++ gRt++++k++w+++l Bradi3g42350.1.p 68 RGAFSRDEDALIVALHAALGNR-WAMIAAKLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-23	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.896	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.0E-27	13	109	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-14	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	5.61E-10	16	62	No hit	No description
PROSITE profile	PS51294	25.931	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-25	66	117	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-14	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	5.17E-11	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGRSPCCEKA HTTKGAWTRE EDDRLSSHVR AHGEGRWRAL PRLAGLPHRC GKSCRLRWVN 60 YLRPDLKRGA FSRDEDALIV ALHAALGNRW AMIAAKLPGR TDNEIKNYWN THLGRRLKGM 120 GIDPVTHRPV VAAAAAGVWD GDGDAAVSFV RTQMPERKKA PPRCPDLNLE LRISPPWQEE 180 EEMPQRAPVK RDVKPAKREE TQQLKPLQGG DFLGLRAGML DFRRIQMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-28	13	117	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g42350.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574896.1	1e-167	myb-related protein Zm38
Swissprot	P20025	2e-83	MYB38_MAIZE; Myb-related protein Zm38
TrEMBL	I1I9A4	1e-166	I1I9A4_BRADI; Uncharacterized protein
STRING	BRADI3G42350.1	1e-167	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	1e-80	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Bradi3g42350.1.p
Entrez Gene	100840448

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]