PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g42130.1.p
Common NameBRADI_3g42130, LOC100828608
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 346aa    MW: 36641.4 Da    PI: 8.0079
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g42130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.5e-34181092102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d++++++isw e g +fvv+ + efa+++Lp+ Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll
  Bradi3g42130.1.p  18 FLAKTYQLVDDPAVDDVISWGEGGATFVVWRPAEFARDILPSCFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDLFRRGEKRLL 101
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Bradi3g42130.1.p 102 CEIHRRKV 109
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-368102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5414107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.07E-3314107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAASSSAGQ RGAAPTPFLA KTYQLVDDPA VDDVISWGEG GATFVVWRPA EFARDILPSC  60
FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DLFRRGEKRL LCEIHRRKVT PPTSAVTVSP  120
AAAAIPMALP VATATTSPVL SAEEQVLSSS SSSERELPSA FPPPSCSGSG SGVGGDLGDE  180
NQRLRRENAR LARELGHMKK LCNNIFALMS KYASAPLDAP APASAGGGNC SGESPLPPPP  240
PPTPPSLELL LSSSSPGPPA DADEEKKMSA MLFGVCIGRK RMRNDDGHGV GGAAEVKPEP  300
MDGRPSPPPP PMEPQGWPVY RPRPVYRQHL LHACCSDGHA GSNSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211811029131Heat shock factor protein 1
5d5v_B1e-211811029131Heat shock factor protein 1
5d5v_D1e-211811029131Heat shock factor protein 1
5hdg_A8e-221811010112Heat shock factor protein 1
5hdn_A8e-221811010112Heat shock factor protein 1
5hdn_B8e-221811010112Heat shock factor protein 1
5hdn_C8e-221811010112Heat shock factor protein 1
5hdn_D8e-221811010112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g42130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235376.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C81e-117HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLI1I9810.0I1I981_BRADI; Uncharacterized protein
STRINGBRADI3G42130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-53heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]