PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g41817.3.p

Common Name

BRADI_3g41817

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 346aa MW: 37256.8 Da PI: 7.1883

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g41817.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	8.1e-11	170	228	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r NR +A rs +RK +i eLe+kv++L ae ++L +l l a l +e+ Bradi3g41817.3.p 170 KKAKRIWANRQSAARSKERKMRYISELERKVQTLHAEATTLSTQLALLHRDTAGLSTEN 228 899******************************************99998888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-15	166	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.519	168	231	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-9	170	228	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-8	170	225	No hit	No description
SuperFamily	SSF57959	9.14E-11	170	221	No hit	No description
CDD	cd14703	7.23E-20	171	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MESKSPVPDG GGGGGNGLPP KPSRRDGAAP PESDMSHMPE SPRRAMGHRR AHSETIGGLP 60 DDLDLGVPGG GGGGEGRASL SDENEEELFS MFLDAEKLNA SEAESSSCAP TGVGARPRHH 120 QHSHSMDASS SFDAEQLLGA AAAVEGMSTA EAKKAMSNAK LAELALVDPK KAKRIWANRQ 180 SAARSKERKM RYISELERKV QTLHAEATTL STQLALLHRD TAGLSTENSE LKMRLQNVEQ 240 QVHLQDALND ALKSELQRLR MATGQMGSNV GGMMNFMGPP LPQPFGGNQT MFHIQSQTAM 300 QPLHHMQIHP HHQQQQQQAL LHPLQLQAQQ QLLGQQHAAA PPNRR*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MESKSPVPDG GGGGGNGLPP KPSRRDGAAP PESDMSHMPE SPRRAMGHRR AHSETIGGLP  60
DDLDLGVPGG GGGGEGRASL SDENEEELFS MFLDAEKLNA SEAESSSCAP TGVGARPRHH  120
QHSHSMDASS SFDAEQLLGA AAAVEGMSTA EAKKAMSNAK LAELALVDPK KAKRIWANRQ  180
SAARSKERKM RYISELERKV QTLHAEATTL STQLALLHRD TAGLSTENSE LKMRLQNVEQ  240
QVHLQDALND ALKSELQRLR MATGQMGSNV GGMMNFMGPP LPQPFGGNQT MFHIQSQTAM  300
QPLHHMQIHP HHQQQQQQAL LHPLQLQAQQ QLLGQQHAAA PPNRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g41817.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181798.1	1e-151	transcription factor RF2a-like
Refseq	XP_020181799.1	1e-151	transcription factor RF2a-like
Swissprot	Q69IL4	1e-109	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	I1I947	0.0	I1I947_BRADI; Uncharacterized protein
STRING	BRADI3G41817.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	8e-79	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi3g41817.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]