PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g41510.2.p

Common Name

BRADI_3g41510, LOC100824416

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 294aa MW: 31628.2 Da PI: 6.0933

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g41510.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.4e-10	135	182	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka iL + ++Y++sLq Bradi3g41510.2.p 135 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALILDEIINYVQSLQ 182 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-17	129	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.88E-11	129	186	No hit	No description
PROSITE profile	PS50888	15.567	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-16	131	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-7	135	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-10	137	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MADFSSSHHS LLLKMPAAST TIDLSSSDVS SFLLHNQTHG QEGAANASAA MVEDGSLESS 60 SAVLDTYPQG SASVGRKRKA STADDSSATL SSAHSKDCKD GKSRRGKREK SSTDQEEAPK 120 GYIHVRARRG QATDSHSLAE RVRRERISER MRLLQTLVPG CDKVTGKALI LDEIINYVQS 180 LQNQVEFLSM RIASMSPVLY GFGLDSDGLL DQTQIGGMFQ EALAVPGAPV LNQEHSPAPS 240 QAMMDTTSYS LQGQGAISFS QSQDNGSYLM QSVGEQRQEL LNQLVFSNMC SFQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g41510.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250810	0.0	AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755760.1	0.0	transcription factor bHLH137 isoform X2
TrEMBL	I1I908	0.0	I1I908_BRADI; Uncharacterized protein
STRING	BRADI3G41510.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g41510.2.p
Entrez Gene	100824416