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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi3g41297.1.p |
Common Name | BRADI_3g41297, LOC100840328 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
M-type_MADS |
Protein Properties |
Length: 204aa MW: 23543.5 Da PI: 5.4605 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi3g41297.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 80.7 | 9.7e-26 | 38 | 86 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
rie+ + rqv fskRr g++KKA+ELSvLCd+eva+i+fs+ g+ly +
Bradi3g41297.1.p 38 RIEDRTSRQVRFSKRRSGLFKKAFELSVLCDVEVALIVFSPAGRLYPFV 86
8*********************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MEERRMLQEQ QQEEAHGHGG KEEEGKRRKK RGKVELRRIE DRTSRQVRFS KRRSGLFKKA 60 FELSVLCDVE VALIVFSPAG RLYPFVSSES SVEEIFGRCR HLPNTIDLNI EVRDPRVDHD 120 IQIDLNEQAA PDPLSDLNHF ADWILEIDVN SMGMAELRRF EEIVSDALTV IKNNLRMKVS 180 QLTQTERNPQ EKANNLSSQE SEE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-16 | 31 | 89 | 3 | 61 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF469336 | 0.0 | KF469336.1 Brachypodium distachyon MADS-box transcription factor 42 mRNA, complete cds. |