PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g40860.2.p | ||||||||
Common Name | BRADI_3g40860, LOC100836886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 399aa MW: 42450.1 Da PI: 6.375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.4e-08 | 200 | 247 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Bradi3g40860.2.p 200 SHSLAERVRRERISQRMKFLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 247 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.02E-9 | 194 | 251 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-16 | 194 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 196 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.964 | 196 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-6 | 200 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-8 | 202 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEGGGGGDYI SSLLNSSPML DFGVLDGTGA GGDCLDKFCG DPGFAERAAR LSSFNGQRFP 60 GAAAGLFGMP PPAPAASNGD FGGAGSREAS SVSDPASGMM KDANAKKRKA SAAKGKAREP 120 SLSTSGQVGD QKELDAKRCR TGDAEKKTAP VKPKAEQARS GSSVEDYGEP KKGKGKNAKP 180 VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKFLQ DLVPGCNKVI GKALMLDEII 240 NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLHKDMYQAC GPSASSVFSL ESSNSAFPFS 300 DQGDVFQSFV PNSMESQCTL NQLDLALSHA TSAQYAFQDG TGSTNLQQQQ RNFWEDDLQS 360 VFHVDNNNGQ SQDNAAGSAQ SFNGADESTQ AGQMKMEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g40860.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755590.1 | 0.0 | transcription factor bHLH78 isoform X2 | ||||
TrEMBL | I1I8S7 | 0.0 | I1I8S7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G40860.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g40860.2.p |
Entrez Gene | 100836886 |