PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40860.1.p
Common NameBRADI_3g40860, LOC100836886
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 402aa    MW: 42733.4 Da    PI: 6.375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40860.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08200247455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Bradi3g40860.1.p 200 SHSLAERVRRERISQRMKFLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 247
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-9194251No hitNo description
SuperFamilySSF474593.79E-16194261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15196259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-6200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEGGGGGDYI SSLLNSSPML DFGVLDGTGA GGDCLDKFCG DPGFAERAAR LSSFNGQRFP  60
GAAAGLFGMP PPAPAASNGD FGGAGSREAS SVSDPASGMM KDANAKKRKA SAAKGKAREP  120
SLSTSGQVGD QKELDAKRCR TGDAEKKTAP VKPKAEQARS GSSVEDYGEP KKGKGKNAKP  180
VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKFLQ DLVPGCNKVI GKALMLDEII  240
NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLHKDMYQAC GPSASSVFSL ESSNSAFPFS  300
DQGDVFQSFV PNSMESQCTL NQLDLALSHA TSAQYAFQDG TGSTNLQQQQ RNFWEDDLQS  360
VFHVDNNNGQ SQDNAAGSAQ SFNVIAGADE STQAGQMKME F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40860.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574799.10.0transcription factor bHLH78 isoform X1
TrEMBLI1I8S60.0I1I8S6_BRADI; Uncharacterized protein
STRINGBRADI3G40860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-58bHLH family protein