PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40437.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 998aa    MW: 110919 Da    PI: 6.5388
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40437.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-21132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ F + ++L +gD+v+F +dg 
  Bradi3g40437.3.p 132 FCKTLTASDTSTHGGFSVPRRAAERIfpqldfSLQPPA-QELQARDLHDNTWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDG- 222
                       99*****************************9777665.49************************************************655. PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l+++++r+
  Bradi3g40437.3.p 223 -KHQLLLGIRRA 233
                       .66679999987 PP
2Auxin_resp117.79.4e-39258341183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wrs++
  Bradi3g40437.3.p 258 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKSSQWRSIQ 341
                       79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-42121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-39124247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-18131232No hitNo description
PROSITE profilePS5086311.716132234IPR003340B3 DNA binding domain
SMARTSM010191.3E-20132234IPR003340B3 DNA binding domain
PfamPF023621.0E-19132233IPR003340B3 DNA binding domain
PfamPF065079.8E-34258341IPR010525Auxin response factor
PfamPF023092.5E-9874969IPR033389AUX/IAA domain
PROSITE profilePS5174527.111884968IPR000270PB1 domain
SuperFamilySSF542772.26E-7888963No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MMSAPESSCG GDEEAGMRRS KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMR  60
KDADAQIPSY PNLPSKLICI LHNVTMEADP DTDEVYARMT LQPVSNVTQC DKEILLASEI  120
ALKQSRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPQ LDFSLQPPAQ ELQARDLHDN  180
TWTFRHIFRG QPKRHLLTTG WSLFISGKRL LAGDSVLFIR DGKHQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGVLAAAAH AAANNSQFTI FYNPRASPSE FVIPFAKYQK AVYSNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKSSQWRSI QVAWDEAAPT ERRTRVSLWE  360
IEPVIAPFFI YPSPLFTAKR ARQPGMIDDE TSEMDNLFKR TMPWLGEDIC KKDLNSQNSI  420
APGLNLVQSL QWMNMQQNLS LAGTGGQASI NITRPQLVAQ AQFQQPQVIL QAQVQQQQPL  480
VQSHTVLHGG LQQIQLLPQQ QPHLQKQQQS QHHQQVQHLV QEQQHIKVQP LQVSSDVNMN  540
MQLSDNQMKL QLLKALQSQQ HLTLEQQKMF FDLQQQMVNC QSDPQQCTQG ATQTVGIHNT  600
IQYTTQQNSQ PHQPVQDSPG NSIPIAKTDI ITSMGASSLS TVGGMQSLKT HNGPSSSTSP  660
CTNTNPVLLQ SIPSSSKNQS SLTAAKTSQS SVMLGPTIEQ EMKSYQSVKP TMIIPKMTEQ  720
RPTTGQDCLN NNPHIDYLDT SSSATSVCLS QADGSFQQNF PPSSLNQHQL LRDTVPDNEF  780
EVTDPRNNLL FGVNIDGQLG LPLNADALLA TSIENDKFMD QMAGNGISNY MSSKESQQEI  840
SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRAPAPAH QRMRTYTKVH KRGAVGRSID  900
INRYSGYDEL KHDIARMFGI EGQLGDQSRV GWKLVYEDHE KDVLLVGDDP WEDFLNCVRC  960
IRILSPQEEM QMRLVGDIGD GFLPNQACSS SDGGQPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671336242388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40437.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403030.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_009403031.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A2K2D2B90.0A0A2K2D2B9_BRADI; Auxin response factor
STRINGLPERR08G17530.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]