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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g38970.5.p | ||||||||
Common Name | BRADI_3g38970, LOC100826888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 37257.1 Da PI: 5.8914 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.9 | 7.9e-18 | 57 | 106 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Bradi3g38970.5.p 57 RSKHSATEQRRRSKINDRFQLLREILPHN----DQKRDKASFLLEVIEYIRFLQ 106 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-22 | 54 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.628 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-18 | 55 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-15 | 57 | 110 | No hit | No description |
Pfam | PF00010 | 3.1E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MDAGSGSSAG AGFDDEDGLA ARREVSSSLK ELTVRVEAKG GSCSGSAGTD QLPNTPRSKH 60 SATEQRRRSK INDRFQLLRE ILPHNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSYPEGN 120 QENGKIVPWA NMYFRSFWKN YQNKDQIPGD VSPDPSQIIK NGSSPDFPFI VKPDDNDNGV 180 ASVGPLGALD QAETDPLGRM SHKSTETSSP DNLPDIVATL PQAHPTRSSP ADGSAMIKEL 240 LHNPELAIDE GTISLSSQYS QELLSTLNHA LQSSGIDLSQ ASISVQINLG KRATKTSDAA 300 ANAASTELVD LAANSQTVDH QLRFGGGAQE HRRATKRRKS DNS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g38970.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235247.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A0Q3FHN9 | 0.0 | A0A0Q3FHN9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38970.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-46 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g38970.5.p |
Entrez Gene | 100826888 |