PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38970.4.p
Common NameBRADI_3g38970, LOC100826888
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 423aa    MW: 45347.2 Da    PI: 6.8671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38970.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.41.1e-17136185255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Bradi3g38970.4.p 136 RSKHSATEQRRRSKINDRFQLLREILPHN----DQKRDKASFLLEVIEYIRFLQ 185
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.0E-22133202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-18134206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.628134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.14E-16136189No hitNo description
PfamPF000104.2E-15136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYTAAG KDSPLPLPQL PGSNSKPPPS PPAQGHQWTL PFGAARSVAV  60
ASSRPQPQSE RKGAGCGGFM DAGSGSSAGA GFDDEDGLAA RREVSSSLKE LTVRVEAKGG  120
SCSGSAGTDQ LPNTPRSKHS ATEQRRRSKI NDRFQLLREI LPHNDQKRDK ASFLLEVIEY  180
IRFLQEKVQK YEVSYPEGNQ ENGKIVPWAN MYFRSFWKNY QNKDQIPGDV SPDPSQIIKN  240
GSSPDFPFIV KPDDNDNGVA SVGPLGALDQ AETDPLGRMS HKSTETSSPD NLPDIVATLP  300
QAHPTRSSPA DGSAMIKELL HNPELAIDEG TISLSSQYSQ ELLSTLNHAL QSSGIDLSQA  360
SISVQINLGK RATKTSDAAA NAASTELVDL AANSQTVDHQ LRFGGGAQEH RRATKRRKSD  420
NS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38970.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235247.10.0transcription factor BIM2 isoform X2
TrEMBLA0A0Q3M2K20.0A0A0Q3M2K2_BRADI; Uncharacterized protein
STRINGBRADI3G38970.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-44BES1-interacting Myc-like protein 2