 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bradi3g38600.1.p |
| Common Name | BRADI_3g38600, LOC100840637 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 267aa MW: 28674.1 Da PI: 4.6195 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi3g38600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.6 | 1e-18 | 51 | 104 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le Fek++++ e++++LA+ lgL+ rqV +WFqNrRa++k
Bradi3g38600.1.p 51 KKRRLSVEQVRALEVSFEKENKLEPERKARLARDLGLQPRQVAIWFQNRRARWK 104
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 131.5 | 3.2e-42 | 50 | 142 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls eqv++LE sFe+e+kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlE+dy+aL++++dal++++++L++++++L +e+k+
Bradi3g38600.1.p 50 EKKRRLSVEQVRALEVSFEKENKLEPERKARLARDLGLQPRQVAIWFQNRRARWKTKQLERDYAALRQSFDALRADHDALRRDKDALLAEVKA 142
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MRRRVANGAG GGPPVFPMVP SDDGFGVGME DDDADEDMAM CGGGGGGAGE KKRRLSVEQV 60
RALEVSFEKE NKLEPERKAR LARDLGLQPR QVAIWFQNRR ARWKTKQLER DYAALRQSFD 120
ALRADHDALR RDKDALLAEV KALKAKLEDG PAAAAASFSS VKEEPTAAAA AQGSSESDSS 180
EVLNNAAVLA PEDKTTPTPM HTAAKAKAVV PLEMGLYAVH GQQLLLKVED DEAAFLGDDD 240
AACGGFFADE QLPSLPWWTE PTDPWA*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 75 | 81 | ERKARLA |
| 2 | 98 | 106 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK068244 | 1e-143 | AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence. |
| GenBank | AK106818 | 1e-143 | AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence. |
| GenBank | CT829446 | 1e-143 | CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence. |
