PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38250.1.p
Common NameBRADI_3g38250, LOC100835736
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 253aa    MW: 27107.6 Da    PI: 8.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-08174214954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Bradi3g38250.1.p 174 ARVRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 214
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-13170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5175214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-6188219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDFDMLNCNP EAQLELMNAM LQLEHLTALP DHHAMAAPVP PTPPSPPCTP AAPPRHFSSA  60
APGHLIPSLP AGPNNCHGAA FHDPPYSSLQ LPAAYNNNAG YATPHQHHQQ QQSSNPAGRT  120
GEVVDGAAAV GPAAMREMIF RIAALQPVNI DPETVRPPKR RNVRISTDPQ SVAARVRRER  180
ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKTQVQS LERAAAANNN NGNHRPSPAG  240
SGAAYQGLNG PW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046931e-113AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149641e-113AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-113CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572294.10.0transcription factor HEC2
TrEMBLI1I7V30.0I1I7V3_BRADI; Uncharacterized protein
STRINGBRADI3G38250.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-38bHLH family protein