PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g37040.1.p
Common NameBRADI_3g37040, LOC100842251
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 373aa    MW: 38310.7 Da    PI: 7.9355
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g37040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.92.4e-334398357
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                      ++ Y+eClkNhAaslGghavDGCgEfmps+ ++ +++ +lkCaACgCHRnFHRr  
  Bradi3g37040.1.p 43 GLSYRECLKNHAASLGGHAVDGCGEFMPSPAADpSNPGSLKCAACGCHRNFHRRLL 98
                      578******************************9*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.4E-284596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-214696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0844697IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-294696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.9E-16220291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27224292IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-21233289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEAVMDVKYR PVVFSNGGGA SAAKKMRPAA AAAAAAVVGD DSGLSYRECL KNHAASLGGH  60
AVDGCGEFMP SPAADPSNPG SLKCAACGCH RNFHRRLLEA PPPSPPPLLA LPPVAPAPHY  120
PQYPQRGEET PERRMPVAAA GDDDYSDDSE ERSDYSEEDD DRPASPPLPA PGVAMPPAAP  180
AGYLSATHML LSLSTSGAPS APAAMASRPP GPTVPAGLHP QPGPGGSSSS SARKRFRTKF  240
SPEQKQQMQA LSERLGWRLQ KSDEAVVHER CREIGVGKGV FKVWMHNNKH NFVGGHSARR  300
SASLSTAGAP QHYPSASPTP APPPPSAPPV HADFNINGSA PAAAAAGDHH SAGFQRPATA  360
TASGGSGSPQ SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-202332911775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g37040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047021e-79AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03.
GenBankAP0051591e-79AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149641e-79AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-79CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572241.10.0zinc-finger homeodomain protein 9
SwissprotQ6Z5283e-79ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLI1I7G00.0I1I7G0_BRADI; Uncharacterized protein
STRINGBRADI3G37040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-26zinc finger homeodomain 1