PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

AP2

Protein Properties

Length: 379aa MW: 41792.3 Da PI: 7.5589

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g36820.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	40	99	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ + k+ ++++lg +g +e Aa+a++ a++k++g Bradi3g36820.7.p 40 AYRGVTRHRWTGRFEAHLWDkNTWtQSqrkKKgRQVYLGAYGGEEAAARAYDLAALKYWG 99 69****************8888733565447***********************98 PP
2	AP2	53.8	4.9e-17	142	193	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I ++ +k+ +lg++gt eeAa a++ a+ + +g Bradi3g36820.7.p 142 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYGTQEEAAMAYDIAAIEHRG 193 89**99*******99654...4********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.92E-16	39	109	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.1E-15	40	108	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-12	40	99	IPR001471	AP2/ERF domain
SMART	SM00380	8.5E-26	40	113	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.336	40	107	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-5	41	52	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-5	89	109	IPR001471	AP2/ERF domain
CDD	cd00018	3.34E-22	142	203	No hit	No description
Pfam	PF00847	1.3E-11	142	192	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-17	142	203	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.6E-17	143	202	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.714	143	201	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-26	143	207	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK 60 NTWTQSQRKK KGRQVYLGAY GGEEAAARAY DLAALKYWGR DTVLNFPLSN YDEEWKEMEG 120 QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYGTQEEA 180 AMAYDIAAIE HRGLNAVTNF DVSRYIDWHR RLCRDLGDNI ITPLTNPTVD LEEAMAGDDD 240 DGQFLLPSQA TTPPSTSSAL GLLLLSPRLK EVIEGSGAAS AMAASTSESS AAGSPPPSWS 300 SSSCSPSPPS PSHSPPETQQ KQQQQEYGAS AAAARCSFPD DVQTYFGCED GCAEVDTFLF 360 GDLSAYAAPM FQFELLDV*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MAKQRTDSAG TDAAAVQLTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK  60
NTWTQSQRKK KGRQVYLGAY GGEEAAARAY DLAALKYWGR DTVLNFPLSN YDEEWKEMEG  120
QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYGTQEEA  180
AMAYDIAAIE HRGLNAVTNF DVSRYIDWHR RLCRDLGDNI ITPLTNPTVD LEEAMAGDDD  240
DGQFLLPSQA TTPPSTSSAL GLLLLSPRLK EVIEGSGAAS AMAASTSESS AAGSPPPSWS  300
SSSCSPSPPS PSHSPPETQQ KQQQQEYGAS AAAARCSFPD DVQTYFGCED GCAEVDTFLF  360
GDLSAYAAPM FQFELLDV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g36820.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572236.1	0.0	AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
Swissprot	Q94AN4	5e-90	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A2K2D1L2	0.0	A0A2K2D1L2_BRADI; Uncharacterized protein
STRING	BRADI3G36820.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	2e-89	AP2 family protein

Link Out ? help Back to Top
Phytozome	Bradi3g36820.7.p

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]