PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36820.13.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 262aa    MW: 28232.1 Da    PI: 4.6629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36820.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-172576155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s+y+GV +++ +g+W+A+I  ++    +k+ +lg++gt eeAa a++ a+ + +g
  Bradi3g36820.13.p 25 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYGTQEEAAMAYDIAAIEHRG 76
                       89****99***********99654...4**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-122575IPR001471AP2/ERF domain
CDDcd000184.47E-242586No hitNo description
SuperFamilySSF541718.5E-182586IPR016177DNA-binding domain
SMARTSM003802.0E-262690IPR001471AP2/ERF domain
PROSITE profilePS5103217.7142684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-172685IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEGQSREEYI GSLRRKSTGF SRGVSKYRGV ARHHHNGKWE ARIGRVYGNK YLYLGTYGTQ  60
EEAAMAYDIA AIEHRGLNAV TNFDVSRYID WHRRLCRDLG DNIITPLTNP TVDLEEAMAG  120
DDDDGQFLLP SQATTPPSTS SALGLLLLSP RLKEVIEGSG AASAMAASTS ESSAAGSPPP  180
SWSSSSCSPS PPSPSHSPPE TQQKQQQQEY GASAAAARCS FPDDVQTYFG CEDGCAEVDT  240
FLFGDLSAYA APMFQFELLD V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36820.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067691e-85AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588201e-85HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572236.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A0Q3FJV10.0A0A0Q3FJV1_BRADI; Uncharacterized protein
TrEMBLA0A2K2D1L20.0A0A2K2D1L2_BRADI; Uncharacterized protein
TrEMBLA0A2K2D1Q50.0A0A2K2D1Q5_BRADI; Uncharacterized protein
TrEMBLI1I7D40.0I1I7D4_BRADI; Uncharacterized protein
STRINGBRADI3G36820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-48AP2 family protein