PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36820.11.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 286aa    MW: 30861.1 Da    PI: 4.7072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36820.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.2e-102562142
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42
                       s+y+GV +++ +g+W+A+I  ++    +k+ +lg++ t   A
  Bradi3g36820.11.p 25 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYVT-LLA 62
                       89****99***********99654...4********99.666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-62561IPR016177DNA-binding domain
PfamPF008474.5E-52561IPR001471AP2/ERF domain
CDDcd000183.52E-1925110No hitNo description
SMARTSM003801.4E-1526114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-52660IPR001471AP2/ERF domain
PROSITE profilePS5103212.24626108IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-583110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-683109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEGQSREEYI GSLRRKSTGF SRGVSKYRGV ARHHHNGKWE ARIGRVYGNK YLYLGTYVTL  60
LASSAEQDRV YLHAGHVFEF GGTQEEAAMA YDIAAIEHRG LNAVTNFDVS RYIDWHRRLC  120
RDLGDNIITP LTNPTVDLEE AMAGDDDDGQ FLLPSQATTP PSTSSALGLL LLSPRLKEVI  180
EGSGAASAMA ASTSESSAAG SPPPSWSSSS CSPSPPSPSH SPPETQQKQQ QQEYGASAAA  240
ARCSFPDDVQ TYFGCEDGCA EVDTFLFGDL SAYAAPMFQF ELLDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36820.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067692e-53AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588202e-53HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317617.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
TrEMBLA0A2K2D1L70.0A0A2K2D1L7_BRADI; Uncharacterized protein
TrEMBLA0A2K2D1L90.0A0A2K2D1L9_BRADI; Uncharacterized protein
TrEMBLA0A2K2D1P20.0A0A2K2D1P2_BRADI; Uncharacterized protein
STRINGBRADI3G36820.11e-135(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.26e-43AP2 family protein