PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36660.2.p
Common NameBRADI_3g36660, LOC100829213
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 377aa    MW: 41029.2 Da    PI: 6.9327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36660.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEde+l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  Bradi3g36660.2.p 14 KGPWTSEEDEKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding422.1e-1367131148
                       TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++ +++++++lG++                  +W++Ia +++ +Rt++++k+ w+++l
  Bradi3g36660.2.p  67 RGKFSLQEEQTIIQLHALLGNRninarsvlssqacflglcRWSAIATHLP-RRTDNEIKNCWNTHL 131
                       89************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.447965IPR017930Myb domain
SuperFamilySSF466891.54E-2311127IPR009057Homeodomain-like
SMARTSM007177.2E-141363IPR001005SANT/Myb domain
PfamPF002499.1E-161461IPR001005SANT/Myb domain
CDDcd001673.72E-111661No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2265135IPR009057Homeodomain-like
PROSITE profilePS5129411.35966135IPR017930Myb domain
SMARTSM007171.5E-1166133IPR001005SANT/Myb domain
PfamPF002494.4E-1267131IPR001005SANT/Myb domain
CDDcd001676.39E-869131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRSPCCDKI GLKKGPWTSE EDEKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRNI NARSVLSSQA CFLGLCRWSA IATHLPRRTD  120
NEIKNCWNTH LKKRLAKMGI DPVTHKATNG ALIGTADIKS AKAAASLSHM AQWESARLEA  180
EGRLAQESKM RTSASTQTSL HPQPMNPSAS AASPCLDVLH AWQGAEIDLE SPTSTLTFTG  240
SNSGMLPIQV TTSLGISKSN STMWQQTCDE LEGEESEWKF LSKQQLQGLE GKERGEDIIG  300
SEQPWFTGMV GVGAGFTDML LDGSSVHGTS ECWGESSNGH AEHSNQVSGD GESKTYWSGI  360
LGMVNSELPS QPPPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20121355108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36660.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316299.10.0transcription factor MYB106 isoform X2
SwissprotQ9LE631e-103MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2K2D1J60.0A0A2K2D1J6_BRADI; Uncharacterized protein
STRINGBRADI3G36660.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-102myb domain protein 106