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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36590.2.p | ||||||||
Common Name | BRADI_3g36590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 24271.9 Da PI: 4.5509 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.2 | 6.2e-34 | 59 | 151 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....k 89 ++drhski T++g RdRR+Rls+ +a+ fF+Lqd LGfdk+s+t++WLl+q+kpai+ l ++ss++++ a++ ++++++++ + Bradi3g36590.2.p 59 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDLLGFDKASNTVDWLLTQSKPAIDRLSLSDSSTPQQGvPAVAAAITGKEKGEAaaaatA 151 689**********************************************************99555552222333333333322222222211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.699 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.2E-32 | 60 | 134 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPPSASSLDE QFFFPAEMYQ QQQQHQETLE AVLRQQVTAA PPAAIPEPGI NGAGRKRPFR 60 TDRHSKIRTA QGVRDRRMRL SVGVARDFFA LQDLLGFDKA SNTVDWLLTQ SKPAIDRLSL 120 SDSSTPQQGV PAVAAAITGK EKGEAAAAAT ASSSTSTGCF RDERATERME SIGDVSGDGG 180 EMDWFASGAP AMEQPMEGLD YYYQYYQLEE MMRAATTEDQ Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36590.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005093 | 3e-64 | AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06. | |||
GenBank | AP014965 | 3e-64 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-64 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | EU702407 | 3e-64 | EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756189.1 | 1e-162 | transcription factor TB1 | ||||
TrEMBL | A0A0Q3Q9P0 | 1e-161 | A0A0Q3Q9P0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36590.1 | 1e-161 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 4e-26 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36590.2.p |